MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:35.8 nTPM
GTEx:9.4 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:14.2 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
1870 Female, age 42, unknown 35.6
1830 Male, age 51, unknown 34.6
2019 Male, age 18, unknown 34.2
1833 Male, age 53, unknown 33.1
2411 Female, age 72, unknown 32.8
2666 Male, age 74, left hemisphere 29.6
2828 Female, age 72, unknown 29.1
2586 Male, age 75, left hemisphere 28.6
1827 Male, age 72, unknown 24.1
2219 Male, age 76, both hemispheres 20.4
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 35.3
2016 Female, age 72, unknown 29.7
2047 Male, age 72, unknown 27.0
1828 Male, age 53, unknown 26.9
2298 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 23.6
2097 Female, age 72, unknown 25.8
1890 Male, age 53, unknown 24.9
1848 Female, age 42, unknown 24.5
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 24.8
2502 Female, age 75, unknown 29.4
1947 Male, age 18, unknown 23.6
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 23.6
2464 Female, age 72, unknown 27.4
1831 Male, age 72, unknown 25.0
2850 Male, age 76, both hemispheres 22.8
1840 Male, age 53, unknown 19.5
Periaquaductal grey, lateral
nTPM: 24.5
2053 Male, age 18, unknown 26.2
2140 Male, age 76, both hemispheres 23.7
2272 Male, age 74, both hemispheres 23.7
Pretectal area
nTPM: 24.2
2316 Male, age 76, right hemisphere 28.4
1815 Male, age 53, unknown 27.6
1817 Female, age 42, unknown 26.2
2407 Male, age 75, both hemispheres 24.7
2273 Male, age 74, both hemispheres 24.2
2007 Male, age 72, unknown 23.6
2224 Female, age 72, unknown 23.5
2667 Female, age 75, unknown 23.4
2825 Male, age 18, unknown 23.3
1944 Female, age 72, unknown 21.3
1816 Male, age 51, unknown 19.7
Red nucleus
nTPM: 35.8
1865 Male, age 51, unknown 42.7
1904 Male, age 53, unknown 41.7
2769 Male, age 72, unknown 39.3
1821 Female, age 72, unknown 38.7
1954 Female, age 42, unknown 38.7
2227 Male, age 72, unknown 37.2
2785 Male, age 18, unknown 35.3
2503 Female, age 72, unknown 35.2
2823 Male, age 76, right hemisphere 34.1
2584 Male, age 75, left hemisphere 30.5
2588 Male, age 74, left hemisphere 28.7
2725 Female, age 75, unknown 26.9
Substantia nigra
nTPM: 28.4
1851 Male, age 51, unknown 31.4
2699 Male, age 18, unknown 30.1
2241 Male, age 72, unknown 29.9
1916 Female, age 42, unknown 29.7
2583 Male, age 75, right hemisphere 28.3
2590 Female, age 75, unknown 28.3
2665 Male, age 74, both hemispheres 28.2
2409 Female, age 72, unknown 27.4
1941 Male, age 53, unknown 26.0
1889 Female, age 72, unknown 24.9
Superior colliculus
nTPM: 26.8
1913 Female, age 42, unknown 33.2
1995 Male, age 72, unknown 33.1
2668 Female, age 75, unknown 30.2
2664 Male, age 75, both hemispheres 28.4
2587 Male, age 74, left hemisphere 27.5
1839 Male, age 51, unknown 25.8
1895 Male, age 76, right hemisphere 23.1
2087 Female, age 72, unknown 22.7
1796 Male, age 53, unknown 22.2
2261 Male, age 18, unknown 21.9
Ventral tegmental area
nTPM: 30.7
2223 Female, age 72, unknown 38.5
2021 Male, age 53, unknown 31.9
2410 Female, age 72, unknown 30.6
1942 Male, age 51, unknown 28.2
1915 Female, age 42, unknown 27.9
2218 Male, age 76, both hemispheres 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 17.5
Min nTPM: 4.5
Std nTPM: 2.5
Median nTPM: 9.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 17.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 14.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 45.9
Min nTPM: 31.8
Sample A Female 37.1
Sample B Female 39.5
Sample C Male 31.8
Sample D Male 45.9
Midbrain
nTPM: 37.4
Samples: 4

Max nTPM: 68.2
Min nTPM: 19.6
Sample A Female 68.2
Sample B Female 37.6
Sample C Male 24.0
Sample D Male 19.6
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 30.7
Min nTPM: 26.5
Sample B Female 30.7
Sample C Male 26.7
Sample D Male 26.5
Superior colliculi
nTPM: 37.1
Samples: 4

Max nTPM: 54.3
Min nTPM: 28.4
Sample A Female 34.5
Sample B Female 54.3
Sample C Male 28.4
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.6
Sample A Male 12.6
Sample B Male 14.3
Sample C Female 15.0
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
583570 Antisense, RP_040831_02_E05, Mouse strain C57BL/6J (56 days, male) 10.5

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