MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.4 nTPM
HPA Brain:83.4 nTPM
GTEx:73.4 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:218.0 nTPM
Mouse:130.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2586 Male, age 75, left hemisphere 83.2
2666 Male, age 74, left hemisphere 73.5
1827 Male, age 72, unknown 73.0
2019 Male, age 18, unknown 69.9
2219 Male, age 76, both hemispheres 66.0
1870 Female, age 42, unknown 60.6
2411 Female, age 72, unknown 60.6
2828 Female, age 72, unknown 57.6
1833 Male, age 53, unknown 56.0
1830 Male, age 51, unknown 49.5
Dorsal raphe nucleus
nTPM: 70.5
2298 Female, age 72, unknown 87.5
2047 Male, age 72, unknown 73.1
1828 Male, age 53, unknown 68.1
2750 Male, age 76, both hemispheres 66.6
2016 Female, age 72, unknown 57.2
Inferior colliculus
nTPM: 62.1
2097 Female, age 72, unknown 68.7
2849 Male, age 72, unknown 65.1
1890 Male, age 53, unknown 58.1
1848 Female, age 42, unknown 56.4
Median raphe nucleus
nTPM: 81.8
2220 Male, age 76, midline 81.8
Periaquaductal grey, anterior
nTPM: 74.5
1795 Male, age 51, unknown 81.0
1947 Male, age 18, unknown 72.2
2502 Female, age 75, unknown 70.2
Periaquaductal grey, dorsal
nTPM: 70.8
1840 Male, age 53, unknown 80.1
2850 Male, age 76, both hemispheres 77.8
1831 Male, age 72, unknown 67.1
2464 Female, age 72, unknown 58.2
Periaquaductal grey, lateral
nTPM: 64.2
2140 Male, age 76, both hemispheres 71.7
2053 Male, age 18, unknown 62.9
2272 Male, age 74, both hemispheres 58.2
Pretectal area
nTPM: 83.4
1816 Male, age 51, unknown 119.1
1944 Female, age 72, unknown 102.4
2007 Male, age 72, unknown 102.4
1817 Female, age 42, unknown 100.2
1815 Male, age 53, unknown 94.4
2224 Female, age 72, unknown 80.4
2667 Female, age 75, unknown 70.6
2825 Male, age 18, unknown 64.1
2407 Male, age 75, both hemispheres 64.0
2316 Male, age 76, right hemisphere 60.4
2273 Male, age 74, both hemispheres 59.5
Red nucleus
nTPM: 54.1
2725 Female, age 75, unknown 70.4
2584 Male, age 75, left hemisphere 64.6
2785 Male, age 18, unknown 63.8
1821 Female, age 72, unknown 57.4
2503 Female, age 72, unknown 54.8
2823 Male, age 76, right hemisphere 52.8
2588 Male, age 74, left hemisphere 52.7
1954 Female, age 42, unknown 48.9
2769 Male, age 72, unknown 47.8
1904 Male, age 53, unknown 46.1
2227 Male, age 72, unknown 45.4
1865 Male, age 51, unknown 44.2
Substantia nigra
nTPM: 80.8
1916 Female, age 42, unknown 104.2
1851 Male, age 51, unknown 92.3
2241 Male, age 72, unknown 89.5
2665 Male, age 74, both hemispheres 83.7
1889 Female, age 72, unknown 83.1
1941 Male, age 53, unknown 83.0
2409 Female, age 72, unknown 70.9
2583 Male, age 75, right hemisphere 68.8
2699 Male, age 18, unknown 67.5
2590 Female, age 75, unknown 65.0
Superior colliculus
nTPM: 70.2
2087 Female, age 72, unknown 88.2
2261 Male, age 18, unknown 84.0
2668 Female, age 75, unknown 78.9
1796 Male, age 53, unknown 75.8
2664 Male, age 75, both hemispheres 72.2
2587 Male, age 74, left hemisphere 63.3
1913 Female, age 42, unknown 62.6
1839 Male, age 51, unknown 62.4
1895 Male, age 76, right hemisphere 60.2
1995 Male, age 72, unknown 54.0
Ventral tegmental area
nTPM: 73.9
2218 Male, age 76, both hemispheres 82.0
1915 Female, age 42, unknown 80.2
2410 Female, age 72, unknown 75.4
2021 Male, age 53, unknown 71.0
1942 Male, age 51, unknown 69.3
2223 Female, age 72, unknown 65.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.4
Samples: 139

Max nTPM: 165.0
Min nTPM: 27.1
Std nTPM: 29.2
Median nTPM: 73.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 165.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 162.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 153.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 149.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 146.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 137.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 133.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 126.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 125.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 120.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 218.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 172.6
Samples: 4

Max nTPM: 244.1
Min nTPM: 116.8
Sample A Female 244.1
Sample B Female 152.5
Sample C Male 176.8
Sample D Male 116.8
Midbrain
nTPM: 216.8
Samples: 4

Max nTPM: 303.9
Min nTPM: 170.8
Sample A Female 187.9
Sample B Female 170.8
Sample C Male 303.9
Sample D Male 204.7
Periaqueductal gray
nTPM: 152.9
Samples: 3

Max nTPM: 171.3
Min nTPM: 138.1
Sample B Female 149.4
Sample C Male 171.3
Sample D Male 138.1
Superior colliculi
nTPM: 218.0
Samples: 4

Max nTPM: 250.2
Min nTPM: 187.6
Sample A Female 230.8
Sample B Female 187.6
Sample C Male 250.2
Sample D Male 203.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.9
Samples: 4

Max nTPM: 136.7
Min nTPM: 125.2
Sample A Male 131.1
Sample B Male 136.7
Sample C Female 125.2
Sample D Female 130.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77924456 Antisense, RP_070219_02_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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