MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:22.1 nTPM
GTEx:3.2 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:4.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.8
1833 Male, age 53, unknown 16.4
1830 Male, age 51, unknown 13.6
2666 Male, age 74, left hemisphere 11.5
2219 Male, age 76, both hemispheres 11.1
1870 Female, age 42, unknown 9.6
2411 Female, age 72, unknown 9.5
2828 Female, age 72, unknown 9.4
1827 Male, age 72, unknown 7.0
2586 Male, age 75, left hemisphere 6.3
2019 Male, age 18, unknown 3.8
Dorsal raphe nucleus
nTPM: 12.2
2750 Male, age 76, both hemispheres 22.9
2298 Female, age 72, unknown 11.4
2016 Female, age 72, unknown 10.6
1828 Male, age 53, unknown 8.9
2047 Male, age 72, unknown 7.1
Inferior colliculus
nTPM: 9.1
2849 Male, age 72, unknown 10.3
1890 Male, age 53, unknown 9.6
1848 Female, age 42, unknown 8.6
2097 Female, age 72, unknown 8.1
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 22.1
1947 Male, age 18, unknown 41.9
1795 Male, age 51, unknown 12.4
2502 Female, age 75, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 8.2
2464 Female, age 72, unknown 10.0
1840 Male, age 53, unknown 8.7
2850 Male, age 76, both hemispheres 7.1
1831 Male, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 8.8
2053 Male, age 18, unknown 11.1
2272 Male, age 74, both hemispheres 7.8
2140 Male, age 76, both hemispheres 7.5
Pretectal area
nTPM: 9.3
2825 Male, age 18, unknown 18.5
2224 Female, age 72, unknown 12.5
2407 Male, age 75, both hemispheres 10.8
2316 Male, age 76, right hemisphere 10.6
2667 Female, age 75, unknown 9.9
1815 Male, age 53, unknown 9.4
2273 Male, age 74, both hemispheres 8.0
1944 Female, age 72, unknown 7.6
2007 Male, age 72, unknown 5.8
1816 Male, age 51, unknown 5.0
1817 Female, age 42, unknown 4.7
Red nucleus
nTPM: 12.0
2823 Male, age 76, right hemisphere 20.8
1904 Male, age 53, unknown 16.4
1821 Female, age 72, unknown 16.3
2588 Male, age 74, left hemisphere 15.4
2227 Male, age 72, unknown 13.1
2725 Female, age 75, unknown 12.6
2769 Male, age 72, unknown 12.4
2584 Male, age 75, left hemisphere 11.6
1954 Female, age 42, unknown 8.2
2503 Female, age 72, unknown 7.0
1865 Male, age 51, unknown 6.3
2785 Male, age 18, unknown 3.7
Substantia nigra
nTPM: 20.3
1916 Female, age 42, unknown 37.9
2241 Male, age 72, unknown 32.5
1851 Male, age 51, unknown 26.1
2409 Female, age 72, unknown 25.0
2699 Male, age 18, unknown 22.8
2590 Female, age 75, unknown 17.1
1889 Female, age 72, unknown 11.8
2583 Male, age 75, right hemisphere 11.6
1941 Male, age 53, unknown 11.4
2665 Male, age 74, both hemispheres 6.5
Superior colliculus
nTPM: 9.5
1895 Male, age 76, right hemisphere 13.1
2587 Male, age 74, left hemisphere 12.3
2668 Female, age 75, unknown 11.7
1839 Male, age 51, unknown 11.6
1995 Male, age 72, unknown 11.4
1796 Male, age 53, unknown 8.1
2087 Female, age 72, unknown 7.8
1913 Female, age 42, unknown 6.9
2261 Male, age 18, unknown 6.9
2664 Male, age 75, both hemispheres 5.2
Ventral tegmental area
nTPM: 21.1
1942 Male, age 51, unknown 31.3
1915 Female, age 42, unknown 25.7
2218 Male, age 76, both hemispheres 21.7
2223 Female, age 72, unknown 17.6
2410 Female, age 72, unknown 15.9
2021 Male, age 53, unknown 14.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 25.4
Min nTPM: 0.0
Std nTPM: 4.1
Median nTPM: 1.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 22.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 14.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 9.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 9.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 9.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 8.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 0.8
Sample A Female 21.1
Sample B Female 13.4
Sample C Male 35.4
Sample D Male 0.8
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 8.7
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 8.7
Sample C Male 0.4
Sample D Male 2.7
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 5.1
Min nTPM: 3.4
Sample B Female 3.4
Sample C Male 5.1
Sample D Male 4.1
Superior colliculi
nTPM: 1.7
Samples: 4

Max nTPM: 4.6
Min nTPM: 0.2
Sample A Female 4.6
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 1.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.2
Sample A Male 4.9
Sample B Male 4.2
Sample C Female 5.0
Sample D Female 5.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74821591 Antisense, RP_060321_02_A07, Mouse strain C57BL/6J (56 days, male) 0.2
75826557 Antisense, RP_060321_02_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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