MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:18.4 nTPM
GTEx:6.9 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:3.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2586 Male, age 75, left hemisphere 19.1
2019 Male, age 18, unknown 16.0
1830 Male, age 51, unknown 14.7
2411 Female, age 72, unknown 14.3
1833 Male, age 53, unknown 14.2
2828 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 13.1
1827 Male, age 72, unknown 12.1
1870 Female, age 42, unknown 11.7
2666 Male, age 74, left hemisphere 11.7
Dorsal raphe nucleus
nTPM: 12.9
2298 Female, age 72, unknown 15.0
2750 Male, age 76, both hemispheres 14.9
2016 Female, age 72, unknown 12.5
1828 Male, age 53, unknown 11.1
2047 Male, age 72, unknown 10.9
Inferior colliculus
nTPM: 11.8
2097 Female, age 72, unknown 13.4
1890 Male, age 53, unknown 12.1
1848 Female, age 42, unknown 11.3
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 24.7
1947 Male, age 18, unknown 15.3
1795 Male, age 51, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 10.2
2464 Female, age 72, unknown 13.0
1840 Male, age 53, unknown 9.6
1831 Male, age 72, unknown 9.2
2850 Male, age 76, both hemispheres 9.1
Periaquaductal grey, lateral
nTPM: 13.0
2272 Male, age 74, both hemispheres 16.7
2140 Male, age 76, both hemispheres 12.2
2053 Male, age 18, unknown 10.1
Pretectal area
nTPM: 12.4
2007 Male, age 72, unknown 16.2
2273 Male, age 74, both hemispheres 15.1
2224 Female, age 72, unknown 13.3
2316 Male, age 76, right hemisphere 13.0
2407 Male, age 75, both hemispheres 12.4
2667 Female, age 75, unknown 11.7
1817 Female, age 42, unknown 11.5
1815 Male, age 53, unknown 11.3
2825 Male, age 18, unknown 11.3
1816 Male, age 51, unknown 11.2
1944 Female, age 72, unknown 9.7
Red nucleus
nTPM: 14.6
2785 Male, age 18, unknown 19.3
1904 Male, age 53, unknown 18.4
2227 Male, age 72, unknown 18.1
2769 Male, age 72, unknown 17.0
2503 Female, age 72, unknown 15.6
2584 Male, age 75, left hemisphere 14.8
2588 Male, age 74, left hemisphere 14.7
1865 Male, age 51, unknown 13.4
1954 Female, age 42, unknown 11.9
1821 Female, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 10.3
2725 Female, age 75, unknown 10.2
Substantia nigra
nTPM: 10.1
2583 Male, age 75, right hemisphere 12.6
1851 Male, age 51, unknown 11.8
1889 Female, age 72, unknown 11.5
1916 Female, age 42, unknown 11.0
1941 Male, age 53, unknown 10.7
2665 Male, age 74, both hemispheres 10.5
2590 Female, age 75, unknown 9.6
2241 Male, age 72, unknown 8.2
2699 Male, age 18, unknown 8.2
2409 Female, age 72, unknown 6.6
Superior colliculus
nTPM: 13.2
2664 Male, age 75, both hemispheres 17.4
2261 Male, age 18, unknown 15.9
2668 Female, age 75, unknown 14.2
1839 Male, age 51, unknown 13.5
1995 Male, age 72, unknown 13.1
1796 Male, age 53, unknown 12.8
1913 Female, age 42, unknown 11.5
2587 Male, age 74, left hemisphere 11.5
2087 Female, age 72, unknown 11.3
1895 Male, age 76, right hemisphere 10.4
Ventral tegmental area
nTPM: 11.7
1942 Male, age 51, unknown 12.6
2223 Female, age 72, unknown 12.3
2410 Female, age 72, unknown 12.2
1915 Female, age 42, unknown 11.4
2218 Male, age 76, both hemispheres 11.2
2021 Male, age 53, unknown 10.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 139

Max nTPM: 16.1
Min nTPM: 1.5
Std nTPM: 2.7
Median nTPM: 6.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 12.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 12.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 12.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 12.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 11.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 11.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 11.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.1
Samples: 4

Max nTPM: 10.1
Min nTPM: 5.5
Sample A Female 10.1
Sample B Female 6.1
Sample C Male 6.8
Sample D Male 5.5
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.4
Sample A Female 6.9
Sample B Female 6.4
Sample C Male 11.8
Sample D Male 7.8
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 7.9
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 7.9
Sample D Male 7.0
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 9.6
Min nTPM: 4.2
Sample A Female 9.1
Sample B Female 4.2
Sample C Male 9.6
Sample D Male 8.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.0
Sample A Male 4.4
Sample B Male 2.7
Sample C Female 2.0
Sample D Female 3.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68920683 Antisense, RP_050303_01_A07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org