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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
106.4
nTPM
HPA Brain:
125.4
nTPM
GTEx:
106.4
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA046697
Antibody HPA061174
Glial cells
Medium
Low
Neuronal cells
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
125.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 65.8
1898
Male, age 80, left hemisphere
84.7
2621
Female, age 67, right hemisphere
81.1
1855
Male, age 76, left hemisphere
67.6
2148
Female, age 91, left hemisphere
59.1
1911
Female, age 85, right hemisphere
54.0
2529
Female, age 94, left hemisphere
48.4
Dentate gyrus nTPM: 59.9
1927
Female, age 91, both hemispheres
77.6
2246
Female, age 85, both hemispheres
63.1
2530
Female, age 94, left hemisphere
62.7
2010
Male, age 76, both hemispheres
59.2
2531
Female, age 67, both hemispheres
54.3
2528
Male, age 74, both hemispheres
42.2
Entorhinal gyrus nTPM: 88.6
2613
Female, age 94, left hemisphere
117.7
2764
Male, age 80, right hemisphere
111.0
1938
Female, age 85, left hemisphere
101.0
1787
Male, age 76, left hemisphere
90.7
2686
Male, age 75, right hemisphere
57.7
2117
Female, age 91, right hemisphere
53.7
Hippocampus, CA1 nTPM: 69.9
2749
Male, age 80, left hemisphere
113.3
2045
Male, age 76, both hemispheres
70.3
1873
Female, age 85, both hemispheres
62.3
2527
Male, age 74, both hemispheres
54.2
2082
Female, age 91, right hemisphere
49.3
Hippocampus, CA2 nTPM: 68.6
1892
Male, age 76, both hemispheres
95.8
1963
Male, age 80, left hemisphere
79.3
1940
Female, age 85, left hemisphere
67.5
2437
Female, age 94, left hemisphere
65.3
2249
Male, age 74, both hemispheres
52.0
2113
Female, age 91, right hemisphere
51.7
Hippocampus, CA3 nTPM: 74.5
2137
Male, age 80, left hemisphere
96.9
2620
Female, age 94, left hemisphere
80.7
1867
Male, age 76, both hemispheres
79.0
2436
Male, age 74, both hemispheres
71.4
1891
Female, age 85, both hemispheres
62.5
2861
Female, age 67, both hemispheres
56.8
Parahippocampal cortex nTPM: 85.1
1850
Male, age 80, both hemispheres
125.9
2245
Female, age 91, both hemispheres
97.3
2693
Female, age 94, both hemispheres
92.7
2532
Female, age 72, left hemisphere
92.3
1933
Female, age 85, both hemispheres
90.1
1990
Female, age 91, right hemisphere
80.6
2250
Female, age 67, right hemisphere
69.7
2018
Male, age 76, both hemispheres
68.9
2622
Female, age 67, right hemisphere
68.8
2692
Male, age 74, both hemispheres
64.7
Perirhinal gyrus nTPM: 125.4
1847
Female, age 91, left hemisphere
151.3
1794
Male, age 80, right hemisphere
141.8
2848
Male, age 76, right hemisphere
123.2
1841
Female, age 85, right hemisphere
108.8
2521
Female, age 94, right hemisphere
101.7
Subiculum nTPM: 67.9
2438
Female, age 94, left hemisphere
87.7
1977
Female, age 85, both hemispheres
83.7
1901
Male, age 80, both hemispheres
76.9
2619
Male, age 74, both hemispheres
70.2
2042
Male, age 76, both hemispheres
49.8
2729
Female, age 91, right hemisphere
39.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
106.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 106.4
Samples: 197
Max nTPM: 216.8
Min nTPM: 37.8
Std nTPM: 35.3
Median nTPM: 99.1
The Human Protein Atlas project is funded
