MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA Brain:33.1 nTPM
GTEx:56.6 nTPM
FANTOM5:180.2 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:187.7 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2219 Male, age 76, both hemispheres 39.0
1870 Female, age 42, unknown 33.0
1833 Male, age 53, unknown 26.5
2411 Female, age 72, unknown 23.8
1827 Male, age 72, unknown 23.2
1830 Male, age 51, unknown 22.4
2666 Male, age 74, left hemisphere 22.3
2828 Female, age 72, unknown 20.5
2019 Male, age 18, unknown 16.3
2586 Male, age 75, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 24.2
2016 Female, age 72, unknown 27.2
2047 Male, age 72, unknown 26.1
1828 Male, age 53, unknown 24.8
2750 Male, age 76, both hemispheres 21.8
2298 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 22.4
1890 Male, age 53, unknown 23.6
2849 Male, age 72, unknown 23.6
2097 Female, age 72, unknown 21.5
1848 Female, age 42, unknown 21.1
Median raphe nucleus
nTPM: 33.1
2220 Male, age 76, midline 33.1
Periaquaductal grey, anterior
nTPM: 23.4
1947 Male, age 18, unknown 29.5
2502 Female, age 75, unknown 20.7
1795 Male, age 51, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 26.1
2850 Male, age 76, both hemispheres 34.8
1831 Male, age 72, unknown 24.7
1840 Male, age 53, unknown 22.6
2464 Female, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 23.7
2140 Male, age 76, both hemispheres 26.6
2053 Male, age 18, unknown 24.2
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 21.4
2224 Female, age 72, unknown 28.6
2825 Male, age 18, unknown 26.6
2667 Female, age 75, unknown 25.0
2316 Male, age 76, right hemisphere 22.9
2273 Male, age 74, both hemispheres 22.7
2407 Male, age 75, both hemispheres 22.3
1815 Male, age 53, unknown 19.7
1816 Male, age 51, unknown 18.3
1944 Female, age 72, unknown 17.3
1817 Female, age 42, unknown 17.2
2007 Male, age 72, unknown 14.9
Red nucleus
nTPM: 25.7
1954 Female, age 42, unknown 33.8
2503 Female, age 72, unknown 31.7
1821 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 30.4
1904 Male, age 53, unknown 29.3
2725 Female, age 75, unknown 29.2
2769 Male, age 72, unknown 25.3
2227 Male, age 72, unknown 23.0
2823 Male, age 76, right hemisphere 22.9
2588 Male, age 74, left hemisphere 20.3
2584 Male, age 75, left hemisphere 17.0
2785 Male, age 18, unknown 14.5
Substantia nigra
nTPM: 25.7
2699 Male, age 18, unknown 35.2
2409 Female, age 72, unknown 32.5
2241 Male, age 72, unknown 31.8
1916 Female, age 42, unknown 26.8
1851 Male, age 51, unknown 24.9
2665 Male, age 74, both hemispheres 24.2
1941 Male, age 53, unknown 22.5
2590 Female, age 75, unknown 22.1
1889 Female, age 72, unknown 21.1
2583 Male, age 75, right hemisphere 16.0
Superior colliculus
nTPM: 21.2
1913 Female, age 42, unknown 26.2
1839 Male, age 51, unknown 24.6
2587 Male, age 74, left hemisphere 22.9
1995 Male, age 72, unknown 22.8
2261 Male, age 18, unknown 21.9
1796 Male, age 53, unknown 21.4
2668 Female, age 75, unknown 19.1
1895 Male, age 76, right hemisphere 19.0
2087 Female, age 72, unknown 17.4
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 25.0
2223 Female, age 72, unknown 33.0
1915 Female, age 42, unknown 27.3
1942 Male, age 51, unknown 24.1
2021 Male, age 53, unknown 22.8
2218 Male, age 76, both hemispheres 22.4
2410 Female, age 72, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.6
Samples: 139

Max nTPM: 200.2
Min nTPM: 31.1
Std nTPM: 24.6
Median nTPM: 49.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 200.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 180.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 167.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 114.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 108.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 87.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 86.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 86.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.2
FF:10158-103A5 76 years, female 180.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 16.7
Min nTPM: 9.3
Sample A Female 16.7
Sample B Female 9.7
Sample C Male 14.4
Sample D Male 9.3
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 19.9
Min nTPM: 12.4
Sample A Female 19.9
Sample B Female 13.0
Sample C Male 12.4
Sample D Male 13.3
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 15.4
Min nTPM: 12.5
Sample B Female 12.5
Sample C Male 15.4
Sample D Male 12.9
Superior colliculi
nTPM: 11.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 7.8
Sample A Female 14.3
Sample B Female 7.8
Sample C Male 10.0
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 187.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 187.7
Samples: 4

Max nTPM: 190.4
Min nTPM: 182.9
Sample A Male 190.4
Sample B Male 187.7
Sample C Female 189.9
Sample D Female 182.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
71717602 Antisense, RP_050614_04_G11, Mouse strain C57BL/6J (56 days, male) 10.0
70474059 Antisense, RP_050614_04_G11, Mouse strain C57BL/6J (56 days, male) 5.9

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