MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:67.1 nTPM
GTEx:34.9 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:9.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.6
2586 Male, age 75, left hemisphere 105.4
2828 Female, age 72, unknown 77.5
2666 Male, age 74, left hemisphere 66.9
2019 Male, age 18, unknown 63.4
1827 Male, age 72, unknown 55.7
1833 Male, age 53, unknown 45.7
1830 Male, age 51, unknown 44.3
1870 Female, age 42, unknown 43.5
2219 Male, age 76, both hemispheres 42.4
2411 Female, age 72, unknown 41.7
Dorsal raphe nucleus
nTPM: 55.4
1828 Male, age 53, unknown 61.5
2016 Female, age 72, unknown 60.4
2047 Male, age 72, unknown 56.9
2298 Female, age 72, unknown 53.5
2750 Male, age 76, both hemispheres 44.7
Inferior colliculus
nTPM: 47.8
2849 Male, age 72, unknown 52.9
1848 Female, age 42, unknown 49.0
1890 Male, age 53, unknown 47.0
2097 Female, age 72, unknown 42.2
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 67.1
1795 Male, age 51, unknown 73.7
1947 Male, age 18, unknown 65.2
2502 Female, age 75, unknown 62.5
Periaquaductal grey, dorsal
nTPM: 50.7
1840 Male, age 53, unknown 56.1
2850 Male, age 76, both hemispheres 54.4
2464 Female, age 72, unknown 46.6
1831 Male, age 72, unknown 45.6
Periaquaductal grey, lateral
nTPM: 48.9
2140 Male, age 76, both hemispheres 53.2
2053 Male, age 18, unknown 48.0
2272 Male, age 74, both hemispheres 45.3
Pretectal area
nTPM: 56.6
2007 Male, age 72, unknown 71.0
1816 Male, age 51, unknown 69.6
1817 Female, age 42, unknown 62.9
2667 Female, age 75, unknown 60.0
1944 Female, age 72, unknown 59.9
2407 Male, age 75, both hemispheres 58.7
1815 Male, age 53, unknown 56.9
2273 Male, age 74, both hemispheres 49.8
2825 Male, age 18, unknown 49.2
2316 Male, age 76, right hemisphere 42.5
2224 Female, age 72, unknown 41.6
Red nucleus
nTPM: 53.0
2584 Male, age 75, left hemisphere 65.3
2588 Male, age 74, left hemisphere 63.5
2785 Male, age 18, unknown 61.4
2769 Male, age 72, unknown 57.9
2227 Male, age 72, unknown 51.0
2503 Female, age 72, unknown 50.5
1821 Female, age 72, unknown 49.6
2823 Male, age 76, right hemisphere 49.4
1954 Female, age 42, unknown 48.8
2725 Female, age 75, unknown 46.4
1865 Male, age 51, unknown 46.3
1904 Male, age 53, unknown 46.1
Substantia nigra
nTPM: 56.2
1916 Female, age 42, unknown 70.4
2583 Male, age 75, right hemisphere 68.1
2665 Male, age 74, both hemispheres 67.7
1851 Male, age 51, unknown 59.1
1941 Male, age 53, unknown 57.5
1889 Female, age 72, unknown 57.3
2699 Male, age 18, unknown 51.7
2590 Female, age 75, unknown 50.8
2241 Male, age 72, unknown 43.3
2409 Female, age 72, unknown 36.0
Superior colliculus
nTPM: 57.6
2664 Male, age 75, both hemispheres 104.3
2668 Female, age 75, unknown 68.2
1796 Male, age 53, unknown 61.5
2087 Female, age 72, unknown 54.3
2261 Male, age 18, unknown 53.0
1839 Male, age 51, unknown 52.5
1995 Male, age 72, unknown 50.5
2587 Male, age 74, left hemisphere 50.3
1913 Female, age 42, unknown 41.4
1895 Male, age 76, right hemisphere 40.5
Ventral tegmental area
nTPM: 50.8
2223 Female, age 72, unknown 55.1
1915 Female, age 42, unknown 53.1
1942 Male, age 51, unknown 52.3
2021 Male, age 53, unknown 49.0
2410 Female, age 72, unknown 47.9
2218 Male, age 76, both hemispheres 47.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 64.7
Min nTPM: 12.8
Std nTPM: 10.8
Median nTPM: 33.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 64.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 64.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 63.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 58.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 57.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 56.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 55.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 54.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 32.4
Min nTPM: 24.0
Sample A Female 31.0
Sample B Female 24.9
Sample C Male 32.4
Sample D Male 24.0
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 33.3
Min nTPM: 23.6
Sample A Female 33.3
Sample B Female 23.6
Sample C Male 30.1
Sample D Male 25.1
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 27.7
Min nTPM: 23.3
Sample B Female 25.0
Sample C Male 27.7
Sample D Male 23.3
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 29.1
Min nTPM: 21.9
Sample A Female 25.7
Sample B Female 21.9
Sample C Male 27.8
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 7.2
Sample A Male 11.9
Sample B Male 8.4
Sample C Female 7.2
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74509597 Antisense, RP_060208_01_A11, Mouse strain C57BL/6J (56 days, male) 0.7

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