MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA Brain:21.1 nTPM
GTEx:27.9 nTPM
FANTOM5:84.7 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:11.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
1870 Female, age 42, unknown 22.5
2411 Female, age 72, unknown 21.4
1830 Male, age 51, unknown 20.2
2828 Female, age 72, unknown 19.7
1833 Male, age 53, unknown 18.8
2019 Male, age 18, unknown 18.5
1827 Male, age 72, unknown 15.3
2219 Male, age 76, both hemispheres 15.0
2586 Male, age 75, left hemisphere 14.7
2666 Male, age 74, left hemisphere 13.1
Dorsal raphe nucleus
nTPM: 17.6
2298 Female, age 72, unknown 20.7
2016 Female, age 72, unknown 20.0
2750 Male, age 76, both hemispheres 17.3
1828 Male, age 53, unknown 16.1
2047 Male, age 72, unknown 13.9
Inferior colliculus
nTPM: 14.9
1848 Female, age 42, unknown 16.7
2097 Female, age 72, unknown 14.4
1890 Male, age 53, unknown 14.3
2849 Male, age 72, unknown 14.3
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 15.6
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 15.3
1795 Male, age 51, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 17.6
2850 Male, age 76, both hemispheres 21.2
2464 Female, age 72, unknown 17.1
1840 Male, age 53, unknown 16.2
1831 Male, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 21.1
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 22.5
2053 Male, age 18, unknown 15.9
Pretectal area
nTPM: 15.7
2273 Male, age 74, both hemispheres 21.2
2316 Male, age 76, right hemisphere 20.8
2224 Female, age 72, unknown 20.6
2667 Female, age 75, unknown 16.9
1815 Male, age 53, unknown 15.5
1817 Female, age 42, unknown 14.8
2825 Male, age 18, unknown 14.8
2007 Male, age 72, unknown 13.0
2407 Male, age 75, both hemispheres 12.1
1944 Female, age 72, unknown 11.5
1816 Male, age 51, unknown 11.2
Red nucleus
nTPM: 20.5
1904 Male, age 53, unknown 26.6
1821 Female, age 72, unknown 24.8
2769 Male, age 72, unknown 24.7
2227 Male, age 72, unknown 23.9
1865 Male, age 51, unknown 23.4
1954 Female, age 42, unknown 22.7
2823 Male, age 76, right hemisphere 20.6
2503 Female, age 72, unknown 19.9
2725 Female, age 75, unknown 18.4
2785 Male, age 18, unknown 18.1
2588 Male, age 74, left hemisphere 11.9
2584 Male, age 75, left hemisphere 11.4
Substantia nigra
nTPM: 15.0
1851 Male, age 51, unknown 19.0
2699 Male, age 18, unknown 18.5
1889 Female, age 72, unknown 15.1
2590 Female, age 75, unknown 14.9
1916 Female, age 42, unknown 14.8
2409 Female, age 72, unknown 14.2
2583 Male, age 75, right hemisphere 14.1
2241 Male, age 72, unknown 13.7
2665 Male, age 74, both hemispheres 13.3
1941 Male, age 53, unknown 12.0
Superior colliculus
nTPM: 16.5
1913 Female, age 42, unknown 22.4
1995 Male, age 72, unknown 22.3
2261 Male, age 18, unknown 18.7
2587 Male, age 74, left hemisphere 17.1
1839 Male, age 51, unknown 15.5
1796 Male, age 53, unknown 15.3
1895 Male, age 76, right hemisphere 14.9
2668 Female, age 75, unknown 14.4
2087 Female, age 72, unknown 13.5
2664 Male, age 75, both hemispheres 10.7
Ventral tegmental area
nTPM: 18.1
2410 Female, age 72, unknown 21.1
2021 Male, age 53, unknown 19.7
2223 Female, age 72, unknown 18.7
2218 Male, age 76, both hemispheres 18.2
1942 Male, age 51, unknown 15.9
1915 Female, age 42, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 139

Max nTPM: 58.2
Min nTPM: 10.3
Std nTPM: 8.6
Median nTPM: 25.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 50.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 45.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 45.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 44.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 42.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 40.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.7
FF:10158-103A5 76 years, female 84.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 26.1
Min nTPM: 21.1
Sample A Female 24.5
Sample B Female 22.9
Sample C Male 21.1
Sample D Male 26.1
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 13.0
Sample A Female 29.4
Sample B Female 22.8
Sample C Male 13.0
Sample D Male 15.3
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 23.3
Min nTPM: 21.0
Sample B Female 21.0
Sample C Male 23.3
Sample D Male 21.5
Superior colliculi
nTPM: 22.5
Samples: 4

Max nTPM: 28.8
Min nTPM: 16.8
Sample A Female 24.3
Sample B Female 28.8
Sample C Male 16.8
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.2
Sample A Male 12.6
Sample B Male 9.2
Sample C Female 12.3
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71920285 Antisense, RP_051012_03_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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