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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1986.8
nTPM
GTEx:
1986.8
nTPM
FANTOM5:
1277.8
Scaled Tags Per Million
Pig:
1611.0
nTPM
Mouse:
6932.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA045118
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1986.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1986.8
Samples: 105
Max nTPM: 5483.4
Min nTPM: 200.8
Std nTPM: 1145.5
Median nTPM: 0.0
352_1
62 years, male
5483.4
354_1
81 years, female
4922.9
172_1
72 years, female
4771.2
350_1
84 years, female
4360.8
349_1
83 years, male
4248.0
386_1
76 years, male
3965.4
163_1
78 years, male
3881.1
243_1
75 years, male
3685.8
218_1
71 years, female
3596.4
319_1
81 years, male
3553.6
394_1
75 years, female
3486.5
356_1
87 years, female
3445.4
425_1
59 years, female
3394.3
379_1
60 years, male
3392.4
447_1
81 years, male
3350.1
321_1
62 years, female
3339.2
6_1
73 years, female
3326.0
355_1
70 years, female
3324.5
177_1
74 years, male
3198.0
376_1
75 years, female
3049.2
353_1
82 years, female
2990.1
377_1
82 years, female
2977.7
335_1
73 years, female
2904.1
480_1
63 years, male
2853.4
292_1
71 years, male
2786.1
317_1
60 years, male
2703.2
404_1
82 years, female
2646.3
351_1
91 years, male
2600.7
389_1
86 years, female
2598.9
503_1
68 years, male
2508.1
406_1
79 years, male
2481.6
318_1
68 years, male
2470.5
286_1
68 years, female
2465.3
517_1
88 years, male
2386.3
316_1
62 years, male
2376.1
99_1
64 years, male
2262.8
320_1
89 years, female
2245.2
347_1
72 years, male
2242.7
229_1
69 years, female
2241.4
375_1
74 years, female
2239.1
115_1
83 years, male
2169.8
526_1
61 years, male
2131.6
506_1
65 years, male
2120.8
291_1
76 years, male
2106.0
293_1
68 years, female
2100.1
322_1
76 years, male
2038.3
251_1
78 years, male
2037.2
189_1
76 years, male
2026.2
384_1
83 years, male
2026.2
173_1
67 years, male
2025.6
452_1
88 years, female
2000.0
468_1
89 years, male
1988.2
348_1
84 years, male
1925.1
9_1
66 years, female
1919.0
246_1
77 years, male
1912.7
265_1
87 years, male
1874.7
324_1
76 years, male
1844.9
295_1
61 years, female
1831.1
237_1
82 years, male
1685.1
2_1
77 years, female
1684.9
264_1
73 years, female
1684.3
405_1
91 years, male
1647.6
396_1
62 years, male
1633.5
266_1
85 years, male
1585.4
217_1
76 years, male
1493.7
254_1
77 years, female
1491.5
145_1
84 years, male
1442.8
126_1
63 years, male
1402.0
518_1
75 years, female
1322.1
35_1
74 years, female
1283.1
120_1
70 years, female
1277.5
117_1
61 years, male
1273.7
499_1
55 years, female
1236.7
311_1
78 years, male
1234.1
4_1
88 years, female
1202.2
288_1
66 years, female
1174.1
137_1
83 years, male
1172.5
17_1
71 years, male
1123.1
18_1
88 years, male
1115.2
142_1
61 years, female
964.2
307_1
66 years, female
930.0
81_1
67 years, male
921.5
109_1
81 years, female
910.4
32_1
67 years, male
895.5
315_1
62 years, female
885.4
313_1
79 years, female
866.1
42_1
85 years, male
824.3
153_1
70 years, female
817.2
415_1
77 years, female
753.8
314_1
67 years, male
739.4
119_1
70 years, female
737.7
162_1
79 years, female
705.7
308_1
70 years, female
688.8
43_1
64 years, female
665.1
139_1
64 years, female
619.2
466_1
57 years, female
556.8
414_1
84 years, female
554.7
495_1
57 years, female
436.9
89_1
63 years, male
434.7
41_1
94 years, female
430.1
149_1
88 years, male
359.7
413_1
59 years, female
253.1
490_1
67 years, female
249.3
501_1
88 years, male
212.2
491_1
89 years, female
200.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.