MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA Brain:27.4 nTPM
GTEx:14.0 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:73.2 nTPM
Mouse:32.3 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2411 Female, age 72, unknown 25.1
1827 Male, age 72, unknown 23.5
2828 Female, age 72, unknown 22.5
1870 Female, age 42, unknown 22.3
2666 Male, age 74, left hemisphere 22.2
2219 Male, age 76, both hemispheres 22.0
2019 Male, age 18, unknown 21.2
1833 Male, age 53, unknown 19.0
2586 Male, age 75, left hemisphere 18.6
1830 Male, age 51, unknown 17.7
Dorsal raphe nucleus
nTPM: 25.4
2298 Female, age 72, unknown 33.1
2750 Male, age 76, both hemispheres 24.7
1828 Male, age 53, unknown 24.1
2047 Male, age 72, unknown 24.0
2016 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 19.2
2097 Female, age 72, unknown 24.0
1890 Male, age 53, unknown 18.5
1848 Female, age 42, unknown 18.2
2849 Male, age 72, unknown 16.0
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 24.1
2502 Female, age 75, unknown 25.7
1947 Male, age 18, unknown 23.8
1795 Male, age 51, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 17.4
1840 Male, age 53, unknown 19.7
2464 Female, age 72, unknown 16.9
2850 Male, age 76, both hemispheres 16.8
1831 Male, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 19.3
2272 Male, age 74, both hemispheres 22.0
2140 Male, age 76, both hemispheres 18.3
2053 Male, age 18, unknown 17.5
Pretectal area
nTPM: 23.4
1816 Male, age 51, unknown 27.6
1944 Female, age 72, unknown 26.9
2007 Male, age 72, unknown 26.0
2224 Female, age 72, unknown 25.8
1817 Female, age 42, unknown 25.6
2273 Male, age 74, both hemispheres 25.3
2667 Female, age 75, unknown 21.9
1815 Male, age 53, unknown 20.7
2825 Male, age 18, unknown 20.4
2316 Male, age 76, right hemisphere 20.1
2407 Male, age 75, both hemispheres 16.9
Red nucleus
nTPM: 20.0
1821 Female, age 72, unknown 26.7
2725 Female, age 75, unknown 22.8
2785 Male, age 18, unknown 22.4
1954 Female, age 42, unknown 21.3
1904 Male, age 53, unknown 20.9
1865 Male, age 51, unknown 20.8
2503 Female, age 72, unknown 20.4
2227 Male, age 72, unknown 20.1
2769 Male, age 72, unknown 19.1
2823 Male, age 76, right hemisphere 16.8
2588 Male, age 74, left hemisphere 15.1
2584 Male, age 75, left hemisphere 13.5
Substantia nigra
nTPM: 27.4
1916 Female, age 42, unknown 42.5
2241 Male, age 72, unknown 34.6
1851 Male, age 51, unknown 33.1
1941 Male, age 53, unknown 30.4
2699 Male, age 18, unknown 26.1
1889 Female, age 72, unknown 25.4
2665 Male, age 74, both hemispheres 24.4
2409 Female, age 72, unknown 21.7
2590 Female, age 75, unknown 19.4
2583 Male, age 75, right hemisphere 16.8
Superior colliculus
nTPM: 20.8
2587 Male, age 74, left hemisphere 24.3
2668 Female, age 75, unknown 24.1
1796 Male, age 53, unknown 23.4
2261 Male, age 18, unknown 23.3
2087 Female, age 72, unknown 22.7
1895 Male, age 76, right hemisphere 20.6
1913 Female, age 42, unknown 20.0
1839 Male, age 51, unknown 17.1
1995 Male, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 15.7
Ventral tegmental area
nTPM: 25.2
2410 Female, age 72, unknown 30.8
1915 Female, age 42, unknown 30.3
2218 Male, age 76, both hemispheres 25.3
1942 Male, age 51, unknown 23.9
2021 Male, age 53, unknown 21.3
2223 Female, age 72, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 139

Max nTPM: 38.3
Min nTPM: 1.8
Std nTPM: 5.4
Median nTPM: 13.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 22.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.0
FF:10158-103A5 76 years, female 59.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.8
Samples: 4

Max nTPM: 95.3
Min nTPM: 49.5
Sample A Female 95.3
Sample B Female 56.1
Sample C Male 70.1
Sample D Male 49.5
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 86.8
Min nTPM: 59.6
Sample A Female 86.8
Sample B Female 59.6
Sample C Male 82.1
Sample D Male 64.3
Periaqueductal gray
nTPM: 56.0
Samples: 3

Max nTPM: 66.8
Min nTPM: 49.2
Sample B Female 52.0
Sample C Male 66.8
Sample D Male 49.2
Superior colliculi
nTPM: 70.3
Samples: 4

Max nTPM: 82.7
Min nTPM: 54.5
Sample A Female 82.7
Sample B Female 54.5
Sample C Male 81.3
Sample D Male 62.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 36.3
Min nTPM: 27.4
Sample A Male 36.3
Sample B Male 36.1
Sample C Female 27.4
Sample D Female 29.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
74882718 Antisense, RP_060315_04_G06, Mouse strain C57BL/6J (56 days, male) 2.3
69817432 Antisense, RP_050510_03_D04, Mouse strain C57BL/6J (56 days, male) 1.6

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