MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.6 nTPM
HPA Brain:324.4 nTPM
GTEx:59.6 nTPM
FANTOM5:235.9 Scaled Tags Per Million
Pig:160.3 nTPM
Mouse:13.1 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 324.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.6
2828 Female, age 72, unknown 209.8
2586 Male, age 75, left hemisphere 197.8
1870 Female, age 42, unknown 160.0
1833 Male, age 53, unknown 139.8
1827 Male, age 72, unknown 137.4
2411 Female, age 72, unknown 133.5
1830 Male, age 51, unknown 133.0
2219 Male, age 76, both hemispheres 106.8
2666 Male, age 74, left hemisphere 104.0
2019 Male, age 18, unknown 103.8
Dorsal raphe nucleus
nTPM: 229.2
2298 Female, age 72, unknown 321.6
2016 Female, age 72, unknown 313.0
1828 Male, age 53, unknown 189.8
2047 Male, age 72, unknown 171.1
2750 Male, age 76, both hemispheres 150.2
Inferior colliculus
nTPM: 145.3
2849 Male, age 72, unknown 159.9
1848 Female, age 42, unknown 152.4
2097 Female, age 72, unknown 142.8
1890 Male, age 53, unknown 126.2
Median raphe nucleus
nTPM: 192.4
2220 Male, age 76, midline 192.4
Periaquaductal grey, anterior
nTPM: 225.7
1795 Male, age 51, unknown 273.7
2502 Female, age 75, unknown 228.2
1947 Male, age 18, unknown 175.2
Periaquaductal grey, dorsal
nTPM: 270.1
2850 Male, age 76, both hemispheres 366.3
1840 Male, age 53, unknown 263.0
1831 Male, age 72, unknown 261.1
2464 Female, age 72, unknown 189.8
Periaquaductal grey, lateral
nTPM: 324.4
2140 Male, age 76, both hemispheres 398.3
2272 Male, age 74, both hemispheres 297.8
2053 Male, age 18, unknown 277.1
Pretectal area
nTPM: 179.8
2273 Male, age 74, both hemispheres 319.1
2224 Female, age 72, unknown 271.8
2316 Male, age 76, right hemisphere 212.3
2667 Female, age 75, unknown 212.3
2825 Male, age 18, unknown 199.4
2407 Male, age 75, both hemispheres 175.3
1944 Female, age 72, unknown 129.0
1815 Male, age 53, unknown 124.2
1816 Male, age 51, unknown 113.3
1817 Female, age 42, unknown 111.2
2007 Male, age 72, unknown 110.2
Red nucleus
nTPM: 138.6
2769 Male, age 72, unknown 186.9
2227 Male, age 72, unknown 178.6
2503 Female, age 72, unknown 154.4
2725 Female, age 75, unknown 151.8
1865 Male, age 51, unknown 140.5
1904 Male, age 53, unknown 138.5
2785 Male, age 18, unknown 132.6
1954 Female, age 42, unknown 131.7
2584 Male, age 75, left hemisphere 125.3
2823 Male, age 76, right hemisphere 124.3
1821 Female, age 72, unknown 104.6
2588 Male, age 74, left hemisphere 93.9
Substantia nigra
nTPM: 156.1
2699 Male, age 18, unknown 281.8
1851 Male, age 51, unknown 199.4
1916 Female, age 42, unknown 187.9
2583 Male, age 75, right hemisphere 157.5
2590 Female, age 75, unknown 148.3
1941 Male, age 53, unknown 144.3
2665 Male, age 74, both hemispheres 131.9
2409 Female, age 72, unknown 112.2
1889 Female, age 72, unknown 110.3
2241 Male, age 72, unknown 87.3
Superior colliculus
nTPM: 178.6
1995 Male, age 72, unknown 286.8
1913 Female, age 42, unknown 253.3
1796 Male, age 53, unknown 216.1
2664 Male, age 75, both hemispheres 191.9
2587 Male, age 74, left hemisphere 165.7
2087 Female, age 72, unknown 152.2
2261 Male, age 18, unknown 151.9
1839 Male, age 51, unknown 144.3
2668 Female, age 75, unknown 117.8
1895 Male, age 76, right hemisphere 106.2
Ventral tegmental area
nTPM: 195.9
2021 Male, age 53, unknown 270.1
1942 Male, age 51, unknown 204.8
1915 Female, age 42, unknown 203.1
2223 Female, age 72, unknown 183.8
2218 Male, age 76, both hemispheres 176.3
2410 Female, age 72, unknown 137.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.6
Samples: 139

Max nTPM: 133.3
Min nTPM: 4.5
Std nTPM: 26.5
Median nTPM: 57.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 133.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 125.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 122.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 118.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 115.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 115.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 115.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 113.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 113.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 110.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 108.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 235.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.9
FF:10158-103A5 76 years, female 235.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 160.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.6
Samples: 4

Max nTPM: 165.9
Min nTPM: 143.0
Sample A Female 143.0
Sample B Female 165.9
Sample C Male 152.8
Sample D Male 148.7
Midbrain
nTPM: 128.5
Samples: 4

Max nTPM: 210.8
Min nTPM: 75.8
Sample A Female 210.8
Sample B Female 130.7
Sample C Male 96.8
Sample D Male 75.8
Periaqueductal gray
nTPM: 160.3
Samples: 3

Max nTPM: 188.4
Min nTPM: 144.7
Sample B Female 144.7
Sample C Male 188.4
Sample D Male 147.7
Superior colliculi
nTPM: 103.7
Samples: 4

Max nTPM: 129.1
Min nTPM: 87.4
Sample A Female 129.1
Sample B Female 87.4
Sample C Male 90.9
Sample D Male 107.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.9
Sample A Male 15.4
Sample B Male 11.9
Sample C Female 13.0
Sample D Female 12.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
70445341 Antisense, RP_050614_03_E09, Mouse strain C57BL/6J (56 days, male) 8.9

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