HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:35.6 nTPM
GTEx:16.0 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:2.4 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.6
Sample id Sample description nTPM
Hippocampus
nTPM: 26.0
2529 Female, age 94, left hemisphere 38.1
1911 Female, age 85, right hemisphere 36.5
2621 Female, age 67, right hemisphere 28.3
1898 Male, age 80, left hemisphere 19.7
2148 Female, age 91, left hemisphere 18.9
1855 Male, age 76, left hemisphere 14.6
Dentate gyrus
nTPM: 23.8
2530 Female, age 94, left hemisphere 35.5
2528 Male, age 74, both hemispheres 26.1
2246 Female, age 85, both hemispheres 23.5
2010 Male, age 76, both hemispheres 21.7
2531 Female, age 67, both hemispheres 21.2
1927 Female, age 91, both hemispheres 15.2
Entorhinal gyrus
nTPM: 27.7
2117 Female, age 91, right hemisphere 35.1
2764 Male, age 80, right hemisphere 28.9
1787 Male, age 76, left hemisphere 26.5
1938 Female, age 85, left hemisphere 25.6
2686 Male, age 75, right hemisphere 25.6
2613 Female, age 94, left hemisphere 24.6
Hippocampus, CA1
nTPM: 19.4
2527 Male, age 74, both hemispheres 27.1
2082 Female, age 91, right hemisphere 25.5
1873 Female, age 85, both hemispheres 23.2
2749 Male, age 80, left hemisphere 14.1
2045 Male, age 76, both hemispheres 7.1
Hippocampus, CA2
nTPM: 24.0
2249 Male, age 74, both hemispheres 32.1
2437 Female, age 94, left hemisphere 29.3
2113 Female, age 91, right hemisphere 27.9
1963 Male, age 80, left hemisphere 23.7
1940 Female, age 85, left hemisphere 18.9
1892 Male, age 76, both hemispheres 12.2
Hippocampus, CA3
nTPM: 19.2
1891 Female, age 85, both hemispheres 37.1
2436 Male, age 74, both hemispheres 19.5
2620 Female, age 94, left hemisphere 16.6
2137 Male, age 80, left hemisphere 14.6
1867 Male, age 76, both hemispheres 13.9
2861 Female, age 67, both hemispheres 13.3
Parahippocampal cortex
nTPM: 22.9
1990 Female, age 91, right hemisphere 29.5
2692 Male, age 74, both hemispheres 28.7
2250 Female, age 67, right hemisphere 24.6
1933 Female, age 85, both hemispheres 24.2
2245 Female, age 91, both hemispheres 23.2
2532 Female, age 72, left hemisphere 22.6
2018 Male, age 76, both hemispheres 22.4
2693 Female, age 94, both hemispheres 21.4
1850 Male, age 80, both hemispheres 19.0
2622 Female, age 67, right hemisphere 13.6
Perirhinal gyrus
nTPM: 18.4
2521 Female, age 94, right hemisphere 25.0
1794 Male, age 80, right hemisphere 20.3
1847 Female, age 91, left hemisphere 16.3
2848 Male, age 76, right hemisphere 15.7
1841 Female, age 85, right hemisphere 14.5
Subiculum
nTPM: 35.6
2619 Male, age 74, both hemispheres 41.9
2042 Male, age 76, both hemispheres 41.0
1977 Female, age 85, both hemispheres 39.6
2438 Female, age 94, left hemisphere 38.6
1901 Male, age 80, both hemispheres 30.8
2729 Female, age 91, right hemisphere 21.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.0
Samples: 197

Max nTPM: 69.0
Min nTPM: 1.3
Std nTPM: 10.8
Median nTPM: 12.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 69.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 58.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 45.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 45.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 43.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 42.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 41.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 40.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 38.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 38.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 36.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.8
FF:10153-102I9 76 years, female 58.4
FF:10169-103B7 60 years, female 9.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Subiculum
nTPM: 4.8
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.8
Sample A Female 5.8
Sample B Female 4.2
Sample C Male 5.2
Sample D Male 3.8
Dorsal hippocampus
nTPM: 7.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 3.5
Sample A Female 5.2
Sample B Female 10.3
Sample C Male 3.5
Sample D Male 12.1
Entorhinal cortex
nTPM: 7.7
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.9
Sample A Female 8.9
Sample B Female 7.6
Sample C Male 8.3
Sample D Male 5.9
Ventral hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.5
Sample A Female 6.8
Sample B Female 8.5
Sample C Male 10.9
Sample D Male 6.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.4
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.1
Sample A Male 2.2
Sample B Male 2.1
Sample C Female 3.0
Sample D Female 2.4
Hippocampal formation
nTPM: 2.4
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.7
Sample A Male 2.9
Sample B Male 2.7
Sample C Female 2.3
Sample D Female 1.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
73925721 Antisense, RP_051214_03_B08, Mouse strain C57BL/6J (56 days, male) 2.0
70946222 Antisense, RP_050419_04_B09, Mouse strain C57BL/6J (56 days, male) 1.1

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