BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:0.2 nTPM
HPA Brain:0.7 nTPM
GTEx:0.2 nTPM

CAUDATE - Antibody stainingi
Antibody HPA044681
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.1
1781 Male, age 74, unknown 0.3
2846 Female, age 79, unknown 0.3
1854 Male, age 80, left hemisphere 0.2
2288 Male, age 75, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.1
2289 Male, age 61, right hemisphere 0.1
2290 Female, age 72, unknown 0.1
2481 Female, age 94, left hemisphere 0.0
Globus pallidus, externus
nTPM: 0.7
2646 Male, age 61, right hemisphere 1.1
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.6
2395 Male, age 75, both hemispheres 0.5
2772 Female, age 79, unknown 0.5
Globus pallidus, internus
nTPM: 0.5
2037 Male, age 80, right hemisphere 0.7
2111 Female, age 85, right hemisphere 0.6
2566 Female, age 72, unknown 0.6
2778 Female, age 91, both hemispheres 0.5
1818 Male, age 74, unknown 0.3
2287 Male, age 75, right hemisphere 0.3
2483 Female, age 94, right hemisphere 0.3
Nucleus accumbens
nTPM: 0.4
2391 Female, age 94, left hemisphere 1.5
2732 Male, age 80, right hemisphere 0.5
1806 Female, age 85, left hemisphere 0.4
1783 Male, age 74, unknown 0.3
2698 Female, age 72, unknown 0.3
2286 Male, age 75, left hemisphere 0.2
1856 Female, age 91, right hemisphere 0.1
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.5
2569 Male, age 61, both hemispheres 1.2
2484 Female, age 94, left hemisphere 0.3
2393 Male, age 80, right hemisphere 0.2
2821 Male, age 75, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.2
1812 Female, age 91, both hemispheres 0.3
1979 Male, age 74, unknown 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.1
2029 Male, age 61, right hemisphere 0.0
Putamen
nTPM: 0.2
1829 Male, age 74, unknown 0.3
1937 Female, age 91, right hemisphere 0.3
2647 Male, age 75, left hemisphere 0.3
2466 Female, age 79, unknown 0.2
2482 Female, age 94, left hemisphere 0.2
2489 Female, age 72, unknown 0.2
1838 Male, age 80, right hemisphere 0.0
Septal nuclei
nTPM: 0.2
2394 Male, age 61, left hemisphere 0.4
2199 Male, age 80, right hemisphere 0.3
1960 Male, age 74, unknown 0.2
2059 Female, age 85, both hemispheres 0.2
2009 Female, age 91, both hemispheres 0.1
2629 Female, age 94, right hemisphere 0.1
2031 Female, age 72, unknown 0.0
Stria terminalis, bed nucleus
nTPM: 0.2
2201 Male, age 74, unknown 0.3
2486 Female, age 94, both hemispheres 0.2
1974 Female, age 91, both hemispheres 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 3.1
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 0.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 0.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 0.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 0.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 0.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 0.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 0.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 0.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 3.3
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 3.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 1.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 0.9
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 0.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 0.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 0.7
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 0.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 0.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 0.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 4.4
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 4.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 0.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 0.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 0.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 0.8
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