MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:246.1 nTPM
HPA Brain:265.9 nTPM
GTEx:246.1 nTPM
FANTOM5:173.4 Scaled Tags Per Million
Pig:62.4 nTPM
Mouse:106.3 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 265.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 234.3
2411 Female, age 72, unknown 268.3
2666 Male, age 74, left hemisphere 259.8
1827 Male, age 72, unknown 259.4
2586 Male, age 75, left hemisphere 244.8
2019 Male, age 18, unknown 233.6
1870 Female, age 42, unknown 226.7
2828 Female, age 72, unknown 225.4
1833 Male, age 53, unknown 222.0
2219 Male, age 76, both hemispheres 208.7
1830 Male, age 51, unknown 194.4
Dorsal raphe nucleus
nTPM: 241.8
2298 Female, age 72, unknown 296.6
1828 Male, age 53, unknown 244.1
2750 Male, age 76, both hemispheres 233.6
2047 Male, age 72, unknown 225.8
2016 Female, age 72, unknown 209.2
Inferior colliculus
nTPM: 237.1
2097 Female, age 72, unknown 268.5
1890 Male, age 53, unknown 239.7
1848 Female, age 42, unknown 224.6
2849 Male, age 72, unknown 215.6
Median raphe nucleus
nTPM: 227.0
2220 Male, age 76, midline 227.0
Periaquaductal grey, anterior
nTPM: 265.9
1795 Male, age 51, unknown 282.3
1947 Male, age 18, unknown 276.9
2502 Female, age 75, unknown 238.4
Periaquaductal grey, dorsal
nTPM: 211.5
1840 Male, age 53, unknown 234.2
2464 Female, age 72, unknown 215.7
1831 Male, age 72, unknown 201.9
2850 Male, age 76, both hemispheres 194.1
Periaquaductal grey, lateral
nTPM: 219.3
2272 Male, age 74, both hemispheres 248.3
2053 Male, age 18, unknown 209.2
2140 Male, age 76, both hemispheres 200.4
Pretectal area
nTPM: 253.5
2007 Male, age 72, unknown 313.1
1817 Female, age 42, unknown 301.3
1944 Female, age 72, unknown 290.3
1816 Male, age 51, unknown 283.0
2224 Female, age 72, unknown 253.5
1815 Male, age 53, unknown 249.8
2667 Female, age 75, unknown 249.8
2273 Male, age 74, both hemispheres 246.2
2825 Male, age 18, unknown 228.0
2316 Male, age 76, right hemisphere 202.8
2407 Male, age 75, both hemispheres 171.3
Red nucleus
nTPM: 256.6
2503 Female, age 72, unknown 300.9
1821 Female, age 72, unknown 297.6
2725 Female, age 75, unknown 278.4
2227 Male, age 72, unknown 275.4
2769 Male, age 72, unknown 269.6
2785 Male, age 18, unknown 256.7
1865 Male, age 51, unknown 246.3
1904 Male, age 53, unknown 246.2
2588 Male, age 74, left hemisphere 242.1
1954 Female, age 42, unknown 241.3
2823 Male, age 76, right hemisphere 222.6
2584 Male, age 75, left hemisphere 202.6
Substantia nigra
nTPM: 264.1
1916 Female, age 42, unknown 355.9
1851 Male, age 51, unknown 320.2
1889 Female, age 72, unknown 277.9
1941 Male, age 53, unknown 257.8
2665 Male, age 74, both hemispheres 256.8
2409 Female, age 72, unknown 253.4
2699 Male, age 18, unknown 251.4
2241 Male, age 72, unknown 230.8
2590 Female, age 75, unknown 228.2
2583 Male, age 75, right hemisphere 208.9
Superior colliculus
nTPM: 231.8
1796 Male, age 53, unknown 281.4
2668 Female, age 75, unknown 268.2
2261 Male, age 18, unknown 259.4
2087 Female, age 72, unknown 257.4
2587 Male, age 74, left hemisphere 230.9
1913 Female, age 42, unknown 219.8
1895 Male, age 76, right hemisphere 204.4
1995 Male, age 72, unknown 199.2
2664 Male, age 75, both hemispheres 198.7
1839 Male, age 51, unknown 198.6
Ventral tegmental area
nTPM: 258.8
2410 Female, age 72, unknown 304.5
1915 Female, age 42, unknown 289.9
2218 Male, age 76, both hemispheres 258.3
1942 Male, age 51, unknown 249.6
2223 Female, age 72, unknown 248.6
2021 Male, age 53, unknown 202.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 246.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 246.1
Samples: 139

Max nTPM: 590.4
Min nTPM: 103.1
Std nTPM: 74.0
Median nTPM: 233.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 590.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 535.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 452.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 426.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 426.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 395.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 389.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 382.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 380.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 377.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 369.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.4
FF:10158-103A5 76 years, female 173.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 67.9
Min nTPM: 35.1
Sample A Female 67.9
Sample B Female 41.0
Sample C Male 46.2
Sample D Male 35.1
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 63.6
Min nTPM: 50.7
Sample A Female 63.6
Sample B Female 50.7
Sample C Male 54.6
Sample D Male 52.0
Periaqueductal gray
nTPM: 45.1
Samples: 3

Max nTPM: 48.9
Min nTPM: 40.8
Sample B Female 45.6
Sample C Male 48.9
Sample D Male 40.8
Superior colliculi
nTPM: 62.4
Samples: 4

Max nTPM: 76.4
Min nTPM: 51.6
Sample A Female 76.4
Sample B Female 60.1
Sample C Male 61.3
Sample D Male 51.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 132.2
Min nTPM: 90.3
Sample A Male 132.2
Sample B Male 93.7
Sample C Female 90.3
Sample D Female 108.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
69838573 Antisense, RP_050310_01_F12, Mouse strain C57BL/6J (56 days, male) 14.2

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