MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA Brain:43.0 nTPM
GTEx:27.0 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:163.0 nTPM
Allen mouse:16.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.3
2219 Male, age 76, both hemispheres 45.0
1827 Male, age 72, unknown 42.2
2019 Male, age 18, unknown 36.3
2411 Female, age 72, unknown 36.3
1870 Female, age 42, unknown 32.7
1833 Male, age 53, unknown 32.5
1830 Male, age 51, unknown 29.9
2586 Male, age 75, left hemisphere 26.0
2666 Male, age 74, left hemisphere 26.0
2828 Female, age 72, unknown 25.8
Dorsal raphe nucleus
nTPM: 32.2
2298 Female, age 72, unknown 41.8
2047 Male, age 72, unknown 31.8
1828 Male, age 53, unknown 31.6
2750 Male, age 76, both hemispheres 30.9
2016 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 43.0
2097 Female, age 72, unknown 53.7
1848 Female, age 42, unknown 41.0
2849 Male, age 72, unknown 40.6
1890 Male, age 53, unknown 36.6
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Periaquaductal grey, anterior
nTPM: 34.5
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 35.7
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 35.4
1840 Male, age 53, unknown 41.3
2464 Female, age 72, unknown 33.7
2850 Male, age 76, both hemispheres 33.4
1831 Male, age 72, unknown 33.2
Periaquaductal grey, lateral
nTPM: 27.9
2140 Male, age 76, both hemispheres 29.7
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 39.6
2007 Male, age 72, unknown 51.8
1816 Male, age 51, unknown 51.7
1944 Female, age 72, unknown 49.1
1817 Female, age 42, unknown 47.1
1815 Male, age 53, unknown 41.0
2224 Female, age 72, unknown 38.9
2667 Female, age 75, unknown 34.6
2825 Male, age 18, unknown 31.7
2316 Male, age 76, right hemisphere 31.2
2273 Male, age 74, both hemispheres 30.4
2407 Male, age 75, both hemispheres 27.9
Red nucleus
nTPM: 26.3
1821 Female, age 72, unknown 34.5
2785 Male, age 18, unknown 32.5
2584 Male, age 75, left hemisphere 30.3
2725 Female, age 75, unknown 29.8
1954 Female, age 42, unknown 28.4
2588 Male, age 74, left hemisphere 25.1
2227 Male, age 72, unknown 24.6
2769 Male, age 72, unknown 23.7
1904 Male, age 53, unknown 22.5
2503 Female, age 72, unknown 22.4
2823 Male, age 76, right hemisphere 21.9
1865 Male, age 51, unknown 20.2
Substantia nigra
nTPM: 37.7
1889 Female, age 72, unknown 49.5
1941 Male, age 53, unknown 45.1
1916 Female, age 42, unknown 44.1
2241 Male, age 72, unknown 42.1
2665 Male, age 74, both hemispheres 39.9
1851 Male, age 51, unknown 36.7
2409 Female, age 72, unknown 35.7
2590 Female, age 75, unknown 31.3
2699 Male, age 18, unknown 27.7
2583 Male, age 75, right hemisphere 25.0
Superior colliculus
nTPM: 33.3
1895 Male, age 76, right hemisphere 43.7
2087 Female, age 72, unknown 42.7
1839 Male, age 51, unknown 38.5
2261 Male, age 18, unknown 37.5
2668 Female, age 75, unknown 36.0
1796 Male, age 53, unknown 35.1
2587 Male, age 74, left hemisphere 28.4
2664 Male, age 75, both hemispheres 27.5
1913 Female, age 42, unknown 22.9
1995 Male, age 72, unknown 21.0
Ventral tegmental area
nTPM: 34.4
2218 Male, age 76, both hemispheres 41.9
2410 Female, age 72, unknown 38.2
1915 Female, age 42, unknown 37.7
1942 Male, age 51, unknown 32.4
2223 Female, age 72, unknown 28.1
2021 Male, age 53, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 139

Max nTPM: 100.8
Min nTPM: 4.1
Std nTPM: 17.9
Median nTPM: 21.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 76.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 59.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 58.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 58.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 4.2
Sample A Female 22.4
Sample B Female 10.2
Sample C Male 20.8
Sample D Male 4.2
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 33.3
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 12.5
Sample C Male 33.3
Sample D Male 31.5
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 17.1
Min nTPM: 11.3
Sample B Female 11.3
Sample C Male 17.1
Sample D Male 11.8
Superior colliculi
nTPM: 26.2
Samples: 4

Max nTPM: 37.3
Min nTPM: 12.7
Sample A Female 28.7
Sample B Female 12.7
Sample C Male 37.3
Sample D Male 26.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.0
Samples: 4

Max nTPM: 170.9
Min nTPM: 152.8
Sample A Male 152.8
Sample B Male 170.9
Sample C Female 167.3
Sample D Female 160.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.6
71234531 Antisense, RP_050505_02_C01, Mouse strain C57BL/6J (56 days, male) 16.6

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