MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:14.9 nTPM
GTEx:4.2 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:22.0 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2586 Male, age 75, left hemisphere 14.5
1833 Male, age 53, unknown 9.6
2219 Male, age 76, both hemispheres 9.5
2411 Female, age 72, unknown 9.3
1870 Female, age 42, unknown 8.5
1830 Male, age 51, unknown 8.4
1827 Male, age 72, unknown 6.4
2828 Female, age 72, unknown 5.1
2019 Male, age 18, unknown 4.6
2666 Male, age 74, left hemisphere 4.6
Dorsal raphe nucleus
nTPM: 9.2
2047 Male, age 72, unknown 12.6
2016 Female, age 72, unknown 9.4
2750 Male, age 76, both hemispheres 9.3
1828 Male, age 53, unknown 7.7
2298 Female, age 72, unknown 7.2
Inferior colliculus
nTPM: 14.9
2849 Male, age 72, unknown 24.1
1848 Female, age 42, unknown 18.4
1890 Male, age 53, unknown 11.0
2097 Female, age 72, unknown 6.1
Median raphe nucleus
nTPM: 6.2
2220 Male, age 76, midline 6.2
Periaquaductal grey, anterior
nTPM: 12.0
2502 Female, age 75, unknown 22.4
1795 Male, age 51, unknown 10.5
1947 Male, age 18, unknown 3.0
Periaquaductal grey, dorsal
nTPM: 8.6
2464 Female, age 72, unknown 12.1
1840 Male, age 53, unknown 10.6
2850 Male, age 76, both hemispheres 8.9
1831 Male, age 72, unknown 2.7
Periaquaductal grey, lateral
nTPM: 6.1
2053 Male, age 18, unknown 9.3
2140 Male, age 76, both hemispheres 4.9
2272 Male, age 74, both hemispheres 4.0
Pretectal area
nTPM: 5.3
2825 Male, age 18, unknown 17.3
2316 Male, age 76, right hemisphere 8.3
2224 Female, age 72, unknown 7.6
2407 Male, age 75, both hemispheres 6.0
2007 Male, age 72, unknown 3.9
2667 Female, age 75, unknown 3.6
1815 Male, age 53, unknown 3.2
2273 Male, age 74, both hemispheres 3.1
1817 Female, age 42, unknown 2.1
1944 Female, age 72, unknown 1.6
1816 Male, age 51, unknown 1.5
Red nucleus
nTPM: 8.2
2584 Male, age 75, left hemisphere 14.2
2227 Male, age 72, unknown 12.6
2769 Male, age 72, unknown 10.5
2588 Male, age 74, left hemisphere 9.3
1821 Female, age 72, unknown 9.1
1904 Male, age 53, unknown 7.3
2823 Male, age 76, right hemisphere 7.2
1865 Male, age 51, unknown 6.2
1954 Female, age 42, unknown 6.0
2503 Female, age 72, unknown 6.0
2785 Male, age 18, unknown 5.2
2725 Female, age 75, unknown 4.4
Substantia nigra
nTPM: 12.5
2699 Male, age 18, unknown 18.9
1916 Female, age 42, unknown 18.7
2241 Male, age 72, unknown 18.5
1851 Male, age 51, unknown 17.0
2665 Male, age 74, both hemispheres 11.7
2409 Female, age 72, unknown 9.6
2583 Male, age 75, right hemisphere 9.1
1941 Male, age 53, unknown 7.7
2590 Female, age 75, unknown 7.5
1889 Female, age 72, unknown 6.1
Superior colliculus
nTPM: 6.9
1895 Male, age 76, right hemisphere 15.8
1796 Male, age 53, unknown 11.3
1839 Male, age 51, unknown 11.3
2587 Male, age 74, left hemisphere 7.0
2664 Male, age 75, both hemispheres 6.9
2668 Female, age 75, unknown 6.9
2261 Male, age 18, unknown 3.3
1913 Female, age 42, unknown 3.2
2087 Female, age 72, unknown 1.7
1995 Male, age 72, unknown 1.5
Ventral tegmental area
nTPM: 14.0
2223 Female, age 72, unknown 22.8
1915 Female, age 42, unknown 15.7
2410 Female, age 72, unknown 13.4
2021 Male, age 53, unknown 11.3
2218 Male, age 76, both hemispheres 11.0
1942 Male, age 51, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 13.5
Min nTPM: 0.3
Std nTPM: 2.5
Median nTPM: 3.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 10.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 10.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 9.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 8.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 8.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 8.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 8.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 3.5
Sample A Female 8.2
Sample B Female 5.2
Sample C Male 5.7
Sample D Male 3.5
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 2.5
Sample A Female 5.9
Sample B Female 6.5
Sample C Male 2.5
Sample D Male 8.0
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 10.4
Min nTPM: 6.8
Sample B Female 6.8
Sample C Male 10.4
Sample D Male 6.9
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 12.1
Min nTPM: 2.7
Sample A Female 12.1
Sample B Female 6.9
Sample C Male 2.7
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.4
Sample A Male 20.4
Sample B Male 20.5
Sample C Female 22.4
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
68861785 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 1.9
70231303 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 1.1

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