HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:102.1 nTPM
GTEx:20.0 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:49.8 nTPM
Allen mouse:14.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 102.1
Sample id Sample description nTPM
Hippocampus
nTPM: 89.9
2148 Female, age 91, left hemisphere 129.2
1855 Male, age 76, left hemisphere 123.3
1898 Male, age 80, left hemisphere 123.1
2621 Female, age 67, right hemisphere 83.8
1911 Female, age 85, right hemisphere 44.4
2529 Female, age 94, left hemisphere 35.7
Dentate gyrus
nTPM: 96.3
2531 Female, age 67, both hemispheres 165.6
2010 Male, age 76, both hemispheres 92.0
1927 Female, age 91, both hemispheres 89.7
2528 Male, age 74, both hemispheres 89.6
2246 Female, age 85, both hemispheres 78.0
2530 Female, age 94, left hemisphere 62.8
Entorhinal gyrus
nTPM: 96.6
2613 Female, age 94, left hemisphere 144.8
2764 Male, age 80, right hemisphere 126.2
1938 Female, age 85, left hemisphere 102.0
2686 Male, age 75, right hemisphere 78.0
1787 Male, age 76, left hemisphere 76.6
2117 Female, age 91, right hemisphere 52.3
Hippocampus, CA1
nTPM: 99.2
2749 Male, age 80, left hemisphere 127.3
2045 Male, age 76, both hemispheres 125.0
1873 Female, age 85, both hemispheres 108.9
2082 Female, age 91, right hemisphere 72.2
2527 Male, age 74, both hemispheres 62.5
Hippocampus, CA2
nTPM: 66.4
1963 Male, age 80, left hemisphere 93.8
1892 Male, age 76, both hemispheres 82.7
2437 Female, age 94, left hemisphere 68.7
2113 Female, age 91, right hemisphere 62.0
1940 Female, age 85, left hemisphere 46.6
2249 Male, age 74, both hemispheres 44.3
Hippocampus, CA3
nTPM: 100.3
2620 Female, age 94, left hemisphere 149.7
2861 Female, age 67, both hemispheres 149.0
2137 Male, age 80, left hemisphere 111.6
1891 Female, age 85, both hemispheres 71.2
1867 Male, age 76, both hemispheres 66.1
2436 Male, age 74, both hemispheres 54.1
Parahippocampal cortex
nTPM: 79.8
1850 Male, age 80, both hemispheres 104.9
1990 Female, age 91, right hemisphere 98.7
2532 Female, age 72, left hemisphere 89.2
2622 Female, age 67, right hemisphere 87.4
2245 Female, age 91, both hemispheres 79.3
2692 Male, age 74, both hemispheres 73.0
1933 Female, age 85, both hemispheres 72.8
2693 Female, age 94, both hemispheres 69.4
2250 Female, age 67, right hemisphere 67.4
2018 Male, age 76, both hemispheres 55.8
Perirhinal gyrus
nTPM: 102.1
1847 Female, age 91, left hemisphere 156.4
1794 Male, age 80, right hemisphere 111.1
2848 Male, age 76, right hemisphere 86.2
2521 Female, age 94, right hemisphere 84.0
1841 Female, age 85, right hemisphere 72.6
Subiculum
nTPM: 71.7
2729 Female, age 91, right hemisphere 102.6
1977 Female, age 85, both hemispheres 83.5
1901 Male, age 80, both hemispheres 77.9
2438 Female, age 94, left hemisphere 62.6
2619 Male, age 74, both hemispheres 57.7
2042 Male, age 76, both hemispheres 45.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.0
Samples: 197

Max nTPM: 87.8
Min nTPM: 0.6
Std nTPM: 15.0
Median nTPM: 17.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 87.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 72.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 61.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 57.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 51.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 51.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 50.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 47.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 47.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 47.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.0
FF:10169-103B7 60 years, female 36.3
FF:10153-102I9 76 years, female 15.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.9
Pig sample Sample description nTPM
Subiculum
nTPM: 31.4
Samples: 4

Max nTPM: 43.4
Min nTPM: 23.4
Sample A Female 43.4
Sample B Female 26.5
Sample C Male 32.2
Sample D Male 23.4
Dorsal hippocampus
nTPM: 46.9
Samples: 4

Max nTPM: 68.3
Min nTPM: 24.0
Sample A Female 68.3
Sample B Female 56.0
Sample C Male 24.0
Sample D Male 39.4
Entorhinal cortex
nTPM: 25.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 22.5
Sample A Female 22.9
Sample B Female 22.5
Sample C Male 28.7
Sample D Male 28.7
Ventral hippocampus
nTPM: 39.5
Samples: 4

Max nTPM: 49.9
Min nTPM: 20.4
Sample A Female 49.9
Sample B Female 20.4
Sample C Male 46.9
Sample D Male 40.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 49.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.3
Samples: 4

Max nTPM: 28.2
Min nTPM: 13.0
Sample A Male 18.4
Sample B Male 13.0
Sample C Female 28.2
Sample D Female 25.4
Hippocampal formation
nTPM: 49.8
Samples: 4

Max nTPM: 62.4
Min nTPM: 32.9
Sample A Male 32.9
Sample B Male 60.1
Sample C Female 62.4
Sample D Female 43.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.0
73788105 Antisense, RP_051213_01_A11, Mouse strain C57BL/6J (56 days, male) 14.8
69874126 Antisense, RP_050512_02_F12, Mouse strain C57BL/6J (56 days, male) 13.2

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