HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		87.959
RNA expressioni
Consensus:45.3 nTPM
HPA Brain:117.5 nTPM
GTEx:45.3 nTPM
FANTOM5:298.3 Scaled Tags Per Million
Pig:74.8 nTPM
Mouse:15.7 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037942
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA037943
Hippocampal formation mean intensity 87.959
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 67.872
Molecular layer of the dentate gyrus 64.401
Granular dentate gyrus 81.618
CA1 - oriens layer 51.706
CA1 - pyramidal layer 64.833
CA1 - radiatum layer 53.314
CA2 - oriens layer 65.438
CA2 - pyramidal layer 81.497
CA2 - radiatum layer 67.994
CA3 - oriens layer 52.170
CA3 - pyramidal layer 56.864
CA3 - radiatum layer 60.069
Stratum lucidum 62.927
Lacunosum moleculare 87.959
Subiculum 59.433

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 117.5
Sample id Sample description nTPM
Hippocampus
nTPM: 88.4
2621 Female, age 67, right hemisphere 102.9
2529 Female, age 94, left hemisphere 99.4
1911 Female, age 85, right hemisphere 92.0
1898 Male, age 80, left hemisphere 80.1
2148 Female, age 91, left hemisphere 78.9
1855 Male, age 76, left hemisphere 77.0
Dentate gyrus
nTPM: 88.6
2530 Female, age 94, left hemisphere 149.7
2010 Male, age 76, both hemispheres 93.9
2531 Female, age 67, both hemispheres 89.2
2246 Female, age 85, both hemispheres 83.1
1927 Female, age 91, both hemispheres 60.3
2528 Male, age 74, both hemispheres 55.3
Entorhinal gyrus
nTPM: 102.5
2686 Male, age 75, right hemisphere 137.1
2117 Female, age 91, right hemisphere 129.1
2764 Male, age 80, right hemisphere 107.5
2613 Female, age 94, left hemisphere 96.0
1938 Female, age 85, left hemisphere 74.0
1787 Male, age 76, left hemisphere 71.2
Hippocampus, CA1
nTPM: 75.9
1873 Female, age 85, both hemispheres 83.4
2082 Female, age 91, right hemisphere 82.4
2749 Male, age 80, left hemisphere 76.7
2527 Male, age 74, both hemispheres 70.6
2045 Male, age 76, both hemispheres 66.4
Hippocampus, CA2
nTPM: 82.2
1963 Male, age 80, left hemisphere 108.2
2113 Female, age 91, right hemisphere 85.3
2437 Female, age 94, left hemisphere 84.2
1940 Female, age 85, left hemisphere 83.1
1892 Male, age 76, both hemispheres 67.1
2249 Male, age 74, both hemispheres 65.4
Hippocampus, CA3
nTPM: 67.3
1891 Female, age 85, both hemispheres 106.7
2861 Female, age 67, both hemispheres 72.6
1867 Male, age 76, both hemispheres 71.7
2137 Male, age 80, left hemisphere 57.6
2620 Female, age 94, left hemisphere 50.8
2436 Male, age 74, both hemispheres 44.7
Parahippocampal cortex
nTPM: 84.7
2692 Male, age 74, both hemispheres 121.8
2532 Female, age 72, left hemisphere 116.9
1990 Female, age 91, right hemisphere 92.5
2245 Female, age 91, both hemispheres 88.5
2622 Female, age 67, right hemisphere 84.6
2018 Male, age 76, both hemispheres 78.4
1850 Male, age 80, both hemispheres 77.6
1933 Female, age 85, both hemispheres 75.2
2693 Female, age 94, both hemispheres 63.6
2250 Female, age 67, right hemisphere 48.1
Perirhinal gyrus
nTPM: 58.0
2848 Male, age 76, right hemisphere 68.8
1794 Male, age 80, right hemisphere 62.1
1847 Female, age 91, left hemisphere 56.2
2521 Female, age 94, right hemisphere 52.3
1841 Female, age 85, right hemisphere 50.8
Subiculum
nTPM: 117.5
2042 Male, age 76, both hemispheres 159.8
2438 Female, age 94, left hemisphere 144.5
1901 Male, age 80, both hemispheres 132.0
1977 Female, age 85, both hemispheres 105.1
2619 Male, age 74, both hemispheres 91.0
2729 Female, age 91, right hemisphere 72.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.3
Samples: 197

Max nTPM: 163.8
Min nTPM: 5.7
Std nTPM: 29.6
Median nTPM: 35.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 163.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 157.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 149.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 145.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 144.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 118.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 110.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 110.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 109.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 106.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 103.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 298.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 298.3
FF:10153-102I9 76 years, female 334.9
FF:10169-103B7 60 years, female 261.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 74.8
Pig sample Sample description nTPM
Subiculum
nTPM: 63.4
Samples: 4

Max nTPM: 65.5
Min nTPM: 62.0
Sample A Female 62.0
Sample B Female 65.5
Sample C Male 62.6
Sample D Male 63.4
Dorsal hippocampus
nTPM: 74.8
Samples: 4

Max nTPM: 93.1
Min nTPM: 47.7
Sample A Female 85.8
Sample B Female 72.6
Sample C Male 93.1
Sample D Male 47.7
Entorhinal cortex
nTPM: 52.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 47.5
Sample A Female 49.5
Sample B Female 54.7
Sample C Male 47.5
Sample D Male 56.4
Ventral hippocampus
nTPM: 67.7
Samples: 4

Max nTPM: 76.3
Min nTPM: 59.3
Sample A Female 76.3
Sample B Female 59.3
Sample C Male 60.1
Sample D Male 75.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.2
Sample A Male 15.4
Sample B Male 14.2
Sample C Female 15.0
Sample D Female 16.1
Hippocampal formation
nTPM: 15.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 15.0
Sample A Male 15.6
Sample B Male 15.8
Sample C Female 16.5
Sample D Female 15.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
322956 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 6.2
275675 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 3.9

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