MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA Brain:21.5 nTPM
GTEx:46.6 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:3.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.6
2586 Male, age 75, left hemisphere 29.1
1827 Male, age 72, unknown 22.3
2666 Male, age 74, left hemisphere 18.5
1870 Female, age 42, unknown 18.2
2828 Female, age 72, unknown 17.4
2219 Male, age 76, both hemispheres 16.8
1833 Male, age 53, unknown 16.5
2411 Female, age 72, unknown 16.4
1830 Male, age 51, unknown 15.8
2019 Male, age 18, unknown 15.4
Dorsal raphe nucleus
nTPM: 17.2
1828 Male, age 53, unknown 20.0
2047 Male, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 17.8
2016 Female, age 72, unknown 14.8
2298 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 21.5
2097 Female, age 72, unknown 23.9
1848 Female, age 42, unknown 21.7
1890 Male, age 53, unknown 20.4
2849 Male, age 72, unknown 20.1
Median raphe nucleus
nTPM: 18.0
2220 Male, age 76, midline 18.0
Periaquaductal grey, anterior
nTPM: 20.0
1947 Male, age 18, unknown 22.0
1795 Male, age 51, unknown 21.3
2502 Female, age 75, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 17.8
1831 Male, age 72, unknown 20.8
2850 Male, age 76, both hemispheres 19.5
1840 Male, age 53, unknown 18.0
2464 Female, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 17.7
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 16.2
2272 Male, age 74, both hemispheres 16.0
Pretectal area
nTPM: 21.5
2007 Male, age 72, unknown 28.8
1817 Female, age 42, unknown 27.0
1816 Male, age 51, unknown 25.0
1944 Female, age 72, unknown 23.6
2667 Female, age 75, unknown 20.5
2825 Male, age 18, unknown 20.3
2273 Male, age 74, both hemispheres 19.6
1815 Male, age 53, unknown 19.4
2407 Male, age 75, both hemispheres 18.8
2224 Female, age 72, unknown 16.6
2316 Male, age 76, right hemisphere 16.6
Red nucleus
nTPM: 19.7
1821 Female, age 72, unknown 25.1
2584 Male, age 75, left hemisphere 23.3
1954 Female, age 42, unknown 21.0
2725 Female, age 75, unknown 21.0
2769 Male, age 72, unknown 20.4
1904 Male, age 53, unknown 19.4
2588 Male, age 74, left hemisphere 19.4
2227 Male, age 72, unknown 18.7
2823 Male, age 76, right hemisphere 18.2
1865 Male, age 51, unknown 17.0
2785 Male, age 18, unknown 16.9
2503 Female, age 72, unknown 16.6
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 29.7
2583 Male, age 75, right hemisphere 24.8
1941 Male, age 53, unknown 24.5
1889 Female, age 72, unknown 23.0
2665 Male, age 74, both hemispheres 22.5
2590 Female, age 75, unknown 21.5
1851 Male, age 51, unknown 21.2
2699 Male, age 18, unknown 20.3
2241 Male, age 72, unknown 11.2
2409 Female, age 72, unknown 10.9
Superior colliculus
nTPM: 20.9
2664 Male, age 75, both hemispheres 31.1
1796 Male, age 53, unknown 23.1
2668 Female, age 75, unknown 22.3
2261 Male, age 18, unknown 22.1
2087 Female, age 72, unknown 21.8
1839 Male, age 51, unknown 19.9
1895 Male, age 76, right hemisphere 18.8
1995 Male, age 72, unknown 17.4
1913 Female, age 42, unknown 16.7
2587 Male, age 74, left hemisphere 16.2
Ventral tegmental area
nTPM: 20.1
1915 Female, age 42, unknown 23.3
2410 Female, age 72, unknown 22.2
2218 Male, age 76, both hemispheres 21.9
1942 Male, age 51, unknown 20.4
2223 Female, age 72, unknown 17.2
2021 Male, age 53, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 139

Max nTPM: 137.0
Min nTPM: 12.0
Std nTPM: 18.0
Median nTPM: 44.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 91.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 87.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 82.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 78.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 77.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 77.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.2
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.5
Sample C Male 2.2
Sample D Male 2.9
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 3.1
Sample C Male 2.0
Sample D Male 1.8
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.6
Sample B Female 3.3
Sample C Male 2.6
Sample D Male 3.3
Superior colliculi
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 1.6
Sample C Male 2.6
Sample D Male 2.2

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