MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA Brain:78.2 nTPM
GTEx:34.3 nTPM
FANTOM5:123.1 Scaled Tags Per Million
Pig:74.8 nTPM
Mouse:134.7 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2411 Female, age 72, unknown 71.9
2586 Male, age 75, left hemisphere 68.2
2666 Male, age 74, left hemisphere 63.7
1833 Male, age 53, unknown 63.1
1870 Female, age 42, unknown 62.6
2019 Male, age 18, unknown 60.7
1827 Male, age 72, unknown 59.9
2219 Male, age 76, both hemispheres 57.4
2828 Female, age 72, unknown 57.0
1830 Male, age 51, unknown 56.6
Dorsal raphe nucleus
nTPM: 73.7
2047 Male, age 72, unknown 82.0
2298 Female, age 72, unknown 81.1
2750 Male, age 76, both hemispheres 80.9
1828 Male, age 53, unknown 68.6
2016 Female, age 72, unknown 55.8
Inferior colliculus
nTPM: 59.8
2097 Female, age 72, unknown 65.0
1848 Female, age 42, unknown 60.2
1890 Male, age 53, unknown 57.1
2849 Male, age 72, unknown 57.0
Median raphe nucleus
nTPM: 78.2
2220 Male, age 76, midline 78.2
Periaquaductal grey, anterior
nTPM: 70.4
1947 Male, age 18, unknown 76.3
2502 Female, age 75, unknown 68.9
1795 Male, age 51, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 58.1
1840 Male, age 53, unknown 63.0
2850 Male, age 76, both hemispheres 60.5
2464 Female, age 72, unknown 56.0
1831 Male, age 72, unknown 52.9
Periaquaductal grey, lateral
nTPM: 54.4
2272 Male, age 74, both hemispheres 55.2
2140 Male, age 76, both hemispheres 54.4
2053 Male, age 18, unknown 53.6
Pretectal area
nTPM: 62.2
1817 Female, age 42, unknown 68.8
1816 Male, age 51, unknown 68.5
2007 Male, age 72, unknown 68.2
2667 Female, age 75, unknown 66.5
1944 Female, age 72, unknown 65.9
2825 Male, age 18, unknown 62.8
1815 Male, age 53, unknown 62.7
2224 Female, age 72, unknown 61.0
2273 Male, age 74, both hemispheres 54.6
2407 Male, age 75, both hemispheres 53.4
2316 Male, age 76, right hemisphere 51.8
Red nucleus
nTPM: 56.9
1821 Female, age 72, unknown 66.2
2584 Male, age 75, left hemisphere 60.7
2725 Female, age 75, unknown 60.5
2588 Male, age 74, left hemisphere 59.3
2823 Male, age 76, right hemisphere 58.1
2785 Male, age 18, unknown 57.5
1954 Female, age 42, unknown 55.9
2769 Male, age 72, unknown 54.6
2227 Male, age 72, unknown 53.7
1865 Male, age 51, unknown 53.3
2503 Female, age 72, unknown 52.2
1904 Male, age 53, unknown 51.0
Substantia nigra
nTPM: 76.9
2241 Male, age 72, unknown 102.0
1916 Female, age 42, unknown 100.5
1941 Male, age 53, unknown 96.8
1851 Male, age 51, unknown 85.9
2665 Male, age 74, both hemispheres 69.7
1889 Female, age 72, unknown 68.5
2699 Male, age 18, unknown 68.1
2409 Female, age 72, unknown 67.0
2590 Female, age 75, unknown 56.3
2583 Male, age 75, right hemisphere 54.6
Superior colliculus
nTPM: 58.4
2668 Female, age 75, unknown 69.0
2587 Male, age 74, left hemisphere 66.0
2664 Male, age 75, both hemispheres 62.6
1839 Male, age 51, unknown 61.4
2261 Male, age 18, unknown 59.4
2087 Female, age 72, unknown 59.0
1895 Male, age 76, right hemisphere 55.9
1796 Male, age 53, unknown 55.4
1913 Female, age 42, unknown 50.5
1995 Male, age 72, unknown 44.9
Ventral tegmental area
nTPM: 70.7
2410 Female, age 72, unknown 78.9
1915 Female, age 42, unknown 77.8
2218 Male, age 76, both hemispheres 71.1
2223 Female, age 72, unknown 68.4
1942 Male, age 51, unknown 65.2
2021 Male, age 53, unknown 63.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 79.4
Min nTPM: 20.1
Std nTPM: 10.4
Median nTPM: 31.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 79.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 60.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 52.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 51.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 50.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 49.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.1
FF:10158-103A5 76 years, female 123.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.9
Samples: 4

Max nTPM: 88.0
Min nTPM: 52.3
Sample A Female 88.0
Sample B Female 52.3
Sample C Male 78.3
Sample D Male 52.8
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 92.5
Min nTPM: 60.5
Sample A Female 75.3
Sample B Female 60.5
Sample C Male 92.5
Sample D Male 70.8
Periaqueductal gray
nTPM: 64.1
Samples: 3

Max nTPM: 76.7
Min nTPM: 56.8
Sample B Female 58.9
Sample C Male 76.7
Sample D Male 56.8
Superior colliculi
nTPM: 73.9
Samples: 4

Max nTPM: 87.8
Min nTPM: 56.6
Sample A Female 87.8
Sample B Female 56.6
Sample C Male 81.5
Sample D Male 69.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.7
Samples: 4

Max nTPM: 140.9
Min nTPM: 125.8
Sample A Male 125.8
Sample B Male 138.6
Sample C Female 140.9
Sample D Female 133.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
71656674 Antisense, RP_050927_04_A07, Mouse strain C57BL/6J (56 days, male) 7.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org