MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:240.2 nTPM
HPA Brain:85.8 nTPM
GTEx:240.2 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Mouse:51.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.3
2586 Male, age 75, left hemisphere 85.2
2828 Female, age 72, unknown 85.2
1870 Female, age 42, unknown 82.2
2411 Female, age 72, unknown 81.3
2019 Male, age 18, unknown 76.7
1827 Male, age 72, unknown 75.6
1833 Male, age 53, unknown 68.9
2219 Male, age 76, both hemispheres 68.5
2666 Male, age 74, left hemisphere 66.4
1830 Male, age 51, unknown 63.1
Dorsal raphe nucleus
nTPM: 79.0
2298 Female, age 72, unknown 94.8
2047 Male, age 72, unknown 79.8
2016 Female, age 72, unknown 74.8
2750 Male, age 76, both hemispheres 73.5
1828 Male, age 53, unknown 72.1
Inferior colliculus
nTPM: 72.2
2097 Female, age 72, unknown 89.1
1890 Male, age 53, unknown 77.6
1848 Female, age 42, unknown 62.1
2849 Male, age 72, unknown 59.9
Median raphe nucleus
nTPM: 72.1
2220 Male, age 76, midline 72.1
Periaquaductal grey, anterior
nTPM: 74.2
1795 Male, age 51, unknown 74.7
2502 Female, age 75, unknown 74.0
1947 Male, age 18, unknown 73.8
Periaquaductal grey, dorsal
nTPM: 64.8
1840 Male, age 53, unknown 73.0
2464 Female, age 72, unknown 63.8
1831 Male, age 72, unknown 63.0
2850 Male, age 76, both hemispheres 59.4
Periaquaductal grey, lateral
nTPM: 65.6
2053 Male, age 18, unknown 70.8
2140 Male, age 76, both hemispheres 64.5
2272 Male, age 74, both hemispheres 61.5
Pretectal area
nTPM: 75.3
2007 Male, age 72, unknown 87.8
1816 Male, age 51, unknown 81.0
2667 Female, age 75, unknown 80.1
1817 Female, age 42, unknown 77.5
2407 Male, age 75, both hemispheres 74.7
1944 Female, age 72, unknown 74.0
2316 Male, age 76, right hemisphere 73.8
2224 Female, age 72, unknown 71.5
2273 Male, age 74, both hemispheres 71.2
1815 Male, age 53, unknown 69.8
2825 Male, age 18, unknown 67.0
Red nucleus
nTPM: 85.8
2503 Female, age 72, unknown 98.6
1821 Female, age 72, unknown 98.3
1904 Male, age 53, unknown 92.4
1954 Female, age 42, unknown 88.8
1865 Male, age 51, unknown 87.9
2769 Male, age 72, unknown 86.3
2725 Female, age 75, unknown 84.6
2227 Male, age 72, unknown 84.3
2785 Male, age 18, unknown 82.5
2588 Male, age 74, left hemisphere 80.6
2823 Male, age 76, right hemisphere 79.9
2584 Male, age 75, left hemisphere 65.4
Substantia nigra
nTPM: 78.8
1916 Female, age 42, unknown 103.6
1851 Male, age 51, unknown 96.2
2665 Male, age 74, both hemispheres 79.8
2241 Male, age 72, unknown 78.3
2699 Male, age 18, unknown 76.9
1889 Female, age 72, unknown 76.6
2583 Male, age 75, right hemisphere 75.0
1941 Male, age 53, unknown 72.8
2590 Female, age 75, unknown 69.6
2409 Female, age 72, unknown 59.5
Superior colliculus
nTPM: 75.4
1796 Male, age 53, unknown 80.9
2261 Male, age 18, unknown 80.2
2668 Female, age 75, unknown 79.9
1995 Male, age 72, unknown 76.5
2587 Male, age 74, left hemisphere 76.1
1913 Female, age 42, unknown 75.4
2664 Male, age 75, both hemispheres 74.9
1895 Male, age 76, right hemisphere 74.0
2087 Female, age 72, unknown 72.0
1839 Male, age 51, unknown 64.0
Ventral tegmental area
nTPM: 80.7
1915 Female, age 42, unknown 98.2
2410 Female, age 72, unknown 84.1
1942 Male, age 51, unknown 81.1
2021 Male, age 53, unknown 76.6
2223 Female, age 72, unknown 73.4
2218 Male, age 76, both hemispheres 70.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 240.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 240.2
Samples: 139

Max nTPM: 552.8
Min nTPM: 122.0
Std nTPM: 64.5
Median nTPM: 224.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 552.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 528.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 435.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 427.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 369.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 366.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 354.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 354.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 352.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 350.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 348.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.7
FF:10158-103A5 76 years, female 72.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 59.3
Min nTPM: 44.5
Sample A Male 59.3
Sample B Male 44.5
Sample C Female 52.5
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69352814 Antisense, RP_050412_01_B11, Mouse strain C57BL/6J (56 days, male) 0.4

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