MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.1 nTPM
HPA Brain:100.1 nTPM
GTEx:34.1 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:107.9 nTPM
Mouse:45.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.3
1833 Male, age 53, unknown 111.8
2411 Female, age 72, unknown 104.5
1830 Male, age 51, unknown 103.6
1870 Female, age 42, unknown 103.6
2019 Male, age 18, unknown 91.8
2828 Female, age 72, unknown 78.5
2586 Male, age 75, left hemisphere 73.5
1827 Male, age 72, unknown 65.5
2666 Male, age 74, left hemisphere 61.7
2219 Male, age 76, both hemispheres 58.2
Dorsal raphe nucleus
nTPM: 61.3
2750 Male, age 76, both hemispheres 98.0
2016 Female, age 72, unknown 66.3
1828 Male, age 53, unknown 58.8
2047 Male, age 72, unknown 42.1
2298 Female, age 72, unknown 41.4
Inferior colliculus
nTPM: 61.2
1848 Female, age 42, unknown 64.9
2849 Male, age 72, unknown 64.3
1890 Male, age 53, unknown 61.8
2097 Female, age 72, unknown 53.6
Median raphe nucleus
nTPM: 73.7
2220 Male, age 76, midline 73.7
Periaquaductal grey, anterior
nTPM: 51.0
1947 Male, age 18, unknown 56.6
2502 Female, age 75, unknown 54.2
1795 Male, age 51, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 54.8
2464 Female, age 72, unknown 67.8
2850 Male, age 76, both hemispheres 66.4
1831 Male, age 72, unknown 51.0
1840 Male, age 53, unknown 33.9
Periaquaductal grey, lateral
nTPM: 61.0
2140 Male, age 76, both hemispheres 67.3
2272 Male, age 74, both hemispheres 58.5
2053 Male, age 18, unknown 57.3
Pretectal area
nTPM: 60.5
2316 Male, age 76, right hemisphere 84.8
1815 Male, age 53, unknown 82.1
2407 Male, age 75, both hemispheres 76.7
1817 Female, age 42, unknown 66.7
2825 Male, age 18, unknown 63.9
2667 Female, age 75, unknown 59.6
2007 Male, age 72, unknown 58.6
2224 Female, age 72, unknown 48.4
2273 Male, age 74, both hemispheres 48.1
1944 Female, age 72, unknown 38.5
1816 Male, age 51, unknown 38.1
Red nucleus
nTPM: 100.1
1865 Male, age 51, unknown 127.9
1904 Male, age 53, unknown 122.2
1821 Female, age 72, unknown 114.6
2785 Male, age 18, unknown 108.8
2769 Male, age 72, unknown 104.5
1954 Female, age 42, unknown 102.7
2227 Male, age 72, unknown 101.2
2503 Female, age 72, unknown 94.0
2823 Male, age 76, right hemisphere 93.7
2588 Male, age 74, left hemisphere 79.3
2584 Male, age 75, left hemisphere 76.4
2725 Female, age 75, unknown 75.6
Substantia nigra
nTPM: 65.0
2590 Female, age 75, unknown 77.2
2583 Male, age 75, right hemisphere 75.9
1851 Male, age 51, unknown 74.2
2409 Female, age 72, unknown 72.3
1889 Female, age 72, unknown 67.2
2241 Male, age 72, unknown 64.6
2699 Male, age 18, unknown 64.5
1941 Male, age 53, unknown 55.2
1916 Female, age 42, unknown 53.0
2665 Male, age 74, both hemispheres 45.5
Superior colliculus
nTPM: 74.0
1913 Female, age 42, unknown 114.2
1995 Male, age 72, unknown 111.0
1895 Male, age 76, right hemisphere 82.2
1839 Male, age 51, unknown 79.9
2587 Male, age 74, left hemisphere 73.9
2668 Female, age 75, unknown 70.3
1796 Male, age 53, unknown 62.2
2664 Male, age 75, both hemispheres 50.8
2261 Male, age 18, unknown 50.0
2087 Female, age 72, unknown 45.5
Ventral tegmental area
nTPM: 71.3
2410 Female, age 72, unknown 87.5
2218 Male, age 76, both hemispheres 78.4
2223 Female, age 72, unknown 74.9
1915 Female, age 42, unknown 65.5
1942 Male, age 51, unknown 61.1
2021 Male, age 53, unknown 60.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 104.7
Min nTPM: 14.9
Std nTPM: 16.2
Median nTPM: 29.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 101.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 82.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 68.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 67.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 66.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 65.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 62.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 61.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.9
Samples: 4

Max nTPM: 165.2
Min nTPM: 73.0
Sample A Female 102.1
Sample B Female 73.0
Sample C Male 91.1
Sample D Male 165.2
Midbrain
nTPM: 99.0
Samples: 4

Max nTPM: 154.8
Min nTPM: 67.7
Sample A Female 154.8
Sample B Female 105.2
Sample C Male 67.7
Sample D Male 68.4
Periaqueductal gray
nTPM: 79.0
Samples: 3

Max nTPM: 90.4
Min nTPM: 69.5
Sample B Female 90.4
Sample C Male 69.5
Sample D Male 77.0
Superior colliculi
nTPM: 85.2
Samples: 4

Max nTPM: 106.3
Min nTPM: 49.6
Sample A Female 99.5
Sample B Female 49.6
Sample C Male 85.4
Sample D Male 106.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 54.0
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 41.2
Sample C Female 54.0
Sample D Female 46.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
74425545 Antisense, RP_051214_02_G07, Mouse strain C57BL/6J (56 days, male) 1.6
69838080 Antisense, RP_050224_02_C07, Mouse strain C57BL/6J (56 days, male) 1.0

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