MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:16.5 nTPM
GTEx:8.1 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:12.7 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.5
2586 Male, age 75, left hemisphere 17.2
1830 Male, age 51, unknown 16.1
2666 Male, age 74, left hemisphere 16.1
2019 Male, age 18, unknown 15.0
1833 Male, age 53, unknown 14.9
1870 Female, age 42, unknown 14.5
2828 Female, age 72, unknown 14.2
1827 Male, age 72, unknown 13.3
2411 Female, age 72, unknown 13.0
2219 Male, age 76, both hemispheres 11.0
Dorsal raphe nucleus
nTPM: 14.5
2016 Female, age 72, unknown 16.2
1828 Male, age 53, unknown 14.8
2298 Female, age 72, unknown 14.0
2750 Male, age 76, both hemispheres 13.7
2047 Male, age 72, unknown 13.6
Inferior colliculus
nTPM: 12.5
1890 Male, age 53, unknown 13.3
2849 Male, age 72, unknown 13.3
1848 Female, age 42, unknown 13.2
2097 Female, age 72, unknown 10.3
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 14.1
1947 Male, age 18, unknown 14.4
1795 Male, age 51, unknown 14.0
2502 Female, age 75, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 16.0
2850 Male, age 76, both hemispheres 21.4
1840 Male, age 53, unknown 15.0
2464 Female, age 72, unknown 13.9
1831 Male, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 16.3
2140 Male, age 76, both hemispheres 17.6
2272 Male, age 74, both hemispheres 16.1
2053 Male, age 18, unknown 15.1
Pretectal area
nTPM: 13.1
2825 Male, age 18, unknown 15.3
2273 Male, age 74, both hemispheres 14.9
2316 Male, age 76, right hemisphere 14.5
2407 Male, age 75, both hemispheres 14.2
2667 Female, age 75, unknown 13.3
1816 Male, age 51, unknown 12.6
2007 Male, age 72, unknown 12.6
1815 Male, age 53, unknown 12.5
2224 Female, age 72, unknown 12.1
1817 Female, age 42, unknown 12.0
1944 Female, age 72, unknown 9.9
Red nucleus
nTPM: 16.5
2588 Male, age 74, left hemisphere 20.6
2227 Male, age 72, unknown 18.5
2785 Male, age 18, unknown 18.1
2769 Male, age 72, unknown 17.9
1904 Male, age 53, unknown 16.5
1954 Female, age 42, unknown 16.4
2584 Male, age 75, left hemisphere 16.4
2823 Male, age 76, right hemisphere 15.9
1865 Male, age 51, unknown 15.8
2503 Female, age 72, unknown 14.9
2725 Female, age 75, unknown 13.5
1821 Female, age 72, unknown 13.2
Substantia nigra
nTPM: 13.2
2409 Female, age 72, unknown 17.6
2590 Female, age 75, unknown 15.3
2583 Male, age 75, right hemisphere 15.2
1851 Male, age 51, unknown 13.5
2699 Male, age 18, unknown 13.3
2665 Male, age 74, both hemispheres 12.4
1941 Male, age 53, unknown 11.9
1889 Female, age 72, unknown 11.8
1916 Female, age 42, unknown 10.5
2241 Male, age 72, unknown 10.5
Superior colliculus
nTPM: 14.0
1995 Male, age 72, unknown 17.6
2664 Male, age 75, both hemispheres 16.0
1913 Female, age 42, unknown 15.6
1895 Male, age 76, right hemisphere 14.6
2668 Female, age 75, unknown 14.1
1839 Male, age 51, unknown 13.6
2587 Male, age 74, left hemisphere 13.6
1796 Male, age 53, unknown 12.3
2087 Female, age 72, unknown 12.1
2261 Male, age 18, unknown 10.6
Ventral tegmental area
nTPM: 11.5
2021 Male, age 53, unknown 13.7
2223 Female, age 72, unknown 12.3
2410 Female, age 72, unknown 11.9
1915 Female, age 42, unknown 11.1
1942 Male, age 51, unknown 10.9
2218 Male, age 76, both hemispheres 9.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.1
Samples: 139

Max nTPM: 14.9
Min nTPM: 3.1
Std nTPM: 2.2
Median nTPM: 7.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 12.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 12.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 12.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 11.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 5.8
Sample C Male 5.4
Sample D Male 9.1
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.3
Sample A Female 8.4
Sample B Female 5.9
Sample C Male 5.3
Sample D Male 5.9
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 7.7
Min nTPM: 6.5
Sample B Female 6.5
Sample C Male 7.4
Sample D Male 7.7
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 6.9
Sample C Male 5.3
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.8
Sample A Male 12.9
Sample B Male 13.4
Sample C Female 10.8
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71497000 Antisense, RP_050913_04_H07, Mouse strain C57BL/6J (56 days, male) 0.9

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