MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.3 nTPM
HPA Brain:15.3 nTPM
GTEx:2.3 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:2.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2586 Male, age 75, left hemisphere 19.5
1827 Male, age 72, unknown 16.5
2828 Female, age 72, unknown 15.4
2666 Male, age 74, left hemisphere 14.7
2411 Female, age 72, unknown 13.3
1833 Male, age 53, unknown 12.9
1830 Male, age 51, unknown 11.2
2219 Male, age 76, both hemispheres 11.1
1870 Female, age 42, unknown 9.7
2019 Male, age 18, unknown 8.1
Dorsal raphe nucleus
nTPM: 12.4
2016 Female, age 72, unknown 14.2
2047 Male, age 72, unknown 12.4
1828 Male, age 53, unknown 12.3
2750 Male, age 76, both hemispheres 11.6
2298 Female, age 72, unknown 11.5
Inferior colliculus
nTPM: 12.9
2849 Male, age 72, unknown 14.1
1890 Male, age 53, unknown 13.7
1848 Female, age 42, unknown 13.5
2097 Female, age 72, unknown 10.3
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Periaquaductal grey, anterior
nTPM: 15.3
1795 Male, age 51, unknown 17.7
1947 Male, age 18, unknown 15.6
2502 Female, age 75, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 12.0
2464 Female, age 72, unknown 13.1
1840 Male, age 53, unknown 12.8
1831 Male, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 10.4
Periaquaductal grey, lateral
nTPM: 12.7
2053 Male, age 18, unknown 15.3
2140 Male, age 76, both hemispheres 12.7
2272 Male, age 74, both hemispheres 10.1
Pretectal area
nTPM: 12.8
1816 Male, age 51, unknown 17.2
1815 Male, age 53, unknown 13.9
1944 Female, age 72, unknown 13.7
2667 Female, age 75, unknown 13.4
2007 Male, age 72, unknown 13.1
2825 Male, age 18, unknown 12.8
1817 Female, age 42, unknown 12.4
2224 Female, age 72, unknown 11.7
2316 Male, age 76, right hemisphere 11.5
2407 Male, age 75, both hemispheres 11.4
2273 Male, age 74, both hemispheres 9.4
Red nucleus
nTPM: 10.6
2588 Male, age 74, left hemisphere 15.6
2584 Male, age 75, left hemisphere 15.0
2725 Female, age 75, unknown 13.5
2823 Male, age 76, right hemisphere 12.7
2503 Female, age 72, unknown 12.3
2785 Male, age 18, unknown 9.5
2227 Male, age 72, unknown 8.7
2769 Male, age 72, unknown 8.6
1865 Male, age 51, unknown 8.1
1904 Male, age 53, unknown 8.1
1821 Female, age 72, unknown 7.8
1954 Female, age 42, unknown 7.7
Substantia nigra
nTPM: 15.1
2241 Male, age 72, unknown 18.6
2409 Female, age 72, unknown 18.3
1916 Female, age 42, unknown 16.1
2583 Male, age 75, right hemisphere 15.8
1889 Female, age 72, unknown 14.9
2590 Female, age 75, unknown 14.3
2665 Male, age 74, both hemispheres 13.6
1941 Male, age 53, unknown 13.5
1851 Male, age 51, unknown 13.0
2699 Male, age 18, unknown 12.8
Superior colliculus
nTPM: 13.1
2261 Male, age 18, unknown 19.9
1796 Male, age 53, unknown 15.9
1895 Male, age 76, right hemisphere 13.4
2087 Female, age 72, unknown 13.2
2664 Male, age 75, both hemispheres 12.8
1913 Female, age 42, unknown 12.0
2668 Female, age 75, unknown 11.7
1839 Male, age 51, unknown 11.2
2587 Male, age 74, left hemisphere 10.4
1995 Male, age 72, unknown 10.1
Ventral tegmental area
nTPM: 12.6
1942 Male, age 51, unknown 14.9
2410 Female, age 72, unknown 14.4
1915 Female, age 42, unknown 13.1
2218 Male, age 76, both hemispheres 12.4
2021 Male, age 53, unknown 11.3
2223 Female, age 72, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.3
Samples: 139

Max nTPM: 11.4
Min nTPM: 0.1
Std nTPM: 1.3
Median nTPM: 2.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 5.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 4.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 4.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 3.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 10.7
Sample A Female 16.0
Sample B Female 10.7
Sample C Male 21.3
Sample D Male 11.0
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 11.0
Min nTPM: 3.7
Sample A Female 9.0
Sample B Female 11.0
Sample C Male 3.7
Sample D Male 8.2
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 6.9
Min nTPM: 5.5
Sample B Female 6.9
Sample C Male 6.7
Sample D Male 5.5
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 6.9
Min nTPM: 2.5
Sample A Female 6.5
Sample B Female 2.5
Sample C Male 3.4
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.2
Sample A Male 2.5
Sample B Male 2.7
Sample C Female 2.2
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
75042243 Antisense, RP_051219_02_D01, Mouse strain C57BL/6J (56 days, male) 2.7
81600600 Antisense, RP_090205_01_D05, Mouse strain C57BL/6J (56 days, male) 1.6

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