MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:13.1 nTPM
GTEx:3.7 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:18.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.0
2666 Male, age 74, left hemisphere 13.7
2019 Male, age 18, unknown 13.4
2586 Male, age 75, left hemisphere 12.9
2828 Female, age 72, unknown 12.7
1827 Male, age 72, unknown 12.3
1830 Male, age 51, unknown 11.6
2411 Female, age 72, unknown 11.2
1833 Male, age 53, unknown 11.0
1870 Female, age 42, unknown 10.9
2219 Male, age 76, both hemispheres 10.1
Dorsal raphe nucleus
nTPM: 12.5
2047 Male, age 72, unknown 13.5
1828 Male, age 53, unknown 13.4
2016 Female, age 72, unknown 12.6
2298 Female, age 72, unknown 12.0
2750 Male, age 76, both hemispheres 10.8
Inferior colliculus
nTPM: 12.4
1848 Female, age 42, unknown 13.0
2097 Female, age 72, unknown 12.5
1890 Male, age 53, unknown 12.4
2849 Male, age 72, unknown 11.6
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 12.9
2502 Female, age 75, unknown 13.4
1947 Male, age 18, unknown 13.3
1795 Male, age 51, unknown 12.0
Periaquaductal grey, dorsal
nTPM: 11.0
2464 Female, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 11.0
1840 Male, age 53, unknown 10.8
1831 Male, age 72, unknown 10.5
Periaquaductal grey, lateral
nTPM: 11.9
2140 Male, age 76, both hemispheres 13.2
2272 Male, age 74, both hemispheres 11.8
2053 Male, age 18, unknown 10.8
Pretectal area
nTPM: 11.8
2007 Male, age 72, unknown 13.6
2667 Female, age 75, unknown 13.1
1944 Female, age 72, unknown 12.6
1816 Male, age 51, unknown 12.2
2316 Male, age 76, right hemisphere 12.1
1817 Female, age 42, unknown 11.6
2273 Male, age 74, both hemispheres 11.5
2224 Female, age 72, unknown 11.1
2407 Male, age 75, both hemispheres 11.1
1815 Male, age 53, unknown 10.9
2825 Male, age 18, unknown 9.8
Red nucleus
nTPM: 11.6
2588 Male, age 74, left hemisphere 12.3
2584 Male, age 75, left hemisphere 12.2
1821 Female, age 72, unknown 12.1
2769 Male, age 72, unknown 11.8
2785 Male, age 18, unknown 11.8
1954 Female, age 42, unknown 11.7
2227 Male, age 72, unknown 11.6
1904 Male, age 53, unknown 11.3
2725 Female, age 75, unknown 11.3
2823 Male, age 76, right hemisphere 11.2
2503 Female, age 72, unknown 11.1
1865 Male, age 51, unknown 10.5
Substantia nigra
nTPM: 13.1
1941 Male, age 53, unknown 15.9
1916 Female, age 42, unknown 15.0
1851 Male, age 51, unknown 13.8
2699 Male, age 18, unknown 13.7
2241 Male, age 72, unknown 13.3
2665 Male, age 74, both hemispheres 13.1
2409 Female, age 72, unknown 12.4
1889 Female, age 72, unknown 11.4
2583 Male, age 75, right hemisphere 11.2
2590 Female, age 75, unknown 11.0
Superior colliculus
nTPM: 11.2
2587 Male, age 74, left hemisphere 12.1
1839 Male, age 51, unknown 11.9
2261 Male, age 18, unknown 11.8
1895 Male, age 76, right hemisphere 11.6
2087 Female, age 72, unknown 11.5
2664 Male, age 75, both hemispheres 11.5
2668 Female, age 75, unknown 11.5
1796 Male, age 53, unknown 10.9
1913 Female, age 42, unknown 9.9
1995 Male, age 72, unknown 9.2
Ventral tegmental area
nTPM: 12.3
1915 Female, age 42, unknown 12.6
1942 Male, age 51, unknown 12.6
2410 Female, age 72, unknown 12.5
2223 Female, age 72, unknown 12.3
2218 Male, age 76, both hemispheres 11.8
2021 Male, age 53, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 6.1
Min nTPM: 1.7
Std nTPM: 0.8
Median nTPM: 3.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 6.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 5.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 5.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 5.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 5.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 5.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 5.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 5.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 15.5
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 10.5
Sample C Male 11.3
Sample D Male 15.5
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 11.7
Sample C Male 9.8
Sample D Male 13.8
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 16.0
Min nTPM: 10.2
Sample B Female 13.5
Sample C Male 10.2
Sample D Male 16.0
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 11.0
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 9.5
Sample C Male 9.6
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.1
Sample A Male 17.1
Sample B Male 19.0
Sample C Female 17.8
Sample D Female 21.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71656759 Antisense, RP_050927_04_C07, Mouse strain C57BL/6J (56 days, male) 0.4

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