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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.2
nTPM
Monaco:
38.1
nTPM
Schmiedel:
42.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
27.2
HPA sample
nTPM
gdT-cell nTPM: 12.4
Samples: 6
Max nTPM: 20.4
Min nTPM: 5.2
P10809_1007
5.2
P10809_1022
10.4
P10809_1041
20.4
P10809_1060
15.4
P10809_1077
9.6
P10809_1098
13.6
MAIT T-cell nTPM: 21.8
Samples: 6
Max nTPM: 27.6
Min nTPM: 16.7
P10809_1006
16.7
P10809_1024
27.6
P10809_1043
19.2
P10809_1062
25.3
P10809_1083
19.1
P10809_1097
22.9
Memory CD4 T-cell nTPM: 18.4
Samples: 6
Max nTPM: 23.1
Min nTPM: 14.0
P10809_1014
14.0
P10809_1026
19.5
P10809_1045
20.6
P10809_1064
17.7
P10809_1086
15.6
P10809_1113
23.1
Memory CD8 T-cell nTPM: 17.5
Samples: 5
Max nTPM: 29.6
Min nTPM: 8.5
P10809_1012
8.5
P10809_1027
29.6
P10809_1046
18.3
P10809_1065
14.1
P10809_1111
17.0
Naive CD4 T-cell nTPM: 27.2
Samples: 6
Max nTPM: 31.9
Min nTPM: 22.7
P10809_1015
22.7
P10809_1030
26.2
P10809_1049
31.9
P10809_1068
26.3
P10809_1085
28.1
P10809_1112
28.0
Naive CD8 T-cell nTPM: 16.3
Samples: 6
Max nTPM: 22.3
Min nTPM: 9.6
P10809_1016
20.6
P10809_1031
13.8
P10809_1050
19.4
P10809_1069
9.6
P10809_1087
11.9
P10809_1110
22.3
T-reg nTPM: 15.9
Samples: 6
Max nTPM: 29.0
Min nTPM: 5.1
P10809_1018
5.1
P10809_1037
11.3
P10809_1056
29.0
P10809_1075
13.1
P10809_1094
17.8
P10809_1106
18.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
38.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.1
Samples: 4
Max nTPM: 17.2
Min nTPM: 11.8
RHH5202_R3573
15.5
RHH5230_R3602
17.2
RHH5259_R3631
11.8
RHH5288_R3660
15.8
Effector memory CD8 T-cell nTPM: 11.2
Samples: 4
Max nTPM: 21.0
Min nTPM: 2.9
RHH5203_R3574
11.6
RHH5231_R3603
9.2
RHH5260_R3632
2.9
RHH5289_R3661
21.0
MAIT T-cell nTPM: 24.6
Samples: 4
Max nTPM: 32.9
Min nTPM: 16.9
RHH5233_R3605
16.9
RHH5205_R3576
18.7
RHH5262_R3634
29.9
RHH5297_R3663
32.9
Memory CD4 T-cell TFH nTPM: 27.0
Samples: 4
Max nTPM: 31.9
Min nTPM: 23.8
RHH5300_R3666
23.8
RHH5236_R3608
23.8
RHH5265_R3637
28.6
RHH5208_R3579
31.9
Memory CD4 T-cell Th1 nTPM: 25.3
Samples: 4
Max nTPM: 31.6
Min nTPM: 18.9
RHH5210_R3581
25.8
RHH5302_R3668
31.6
RHH5238_R3610
18.9
RHH5267_R3639
24.7
Memory CD4 T-cell Th1/Th17 nTPM: 27.6
Samples: 4
Max nTPM: 46.1
Min nTPM: 17.4
RHH5303_R3669
46.1
RHH5211_R3582
26.9
RHH5239_R3611
20.1
RHH5268_R3640
17.4
Memory CD4 T-cell Th17 nTPM: 17.6
Samples: 4
Max nTPM: 29.3
Min nTPM: 9.7
RHH5304_R3670
21.3
RHH5212_R3583
29.3
RHH5240_R3612
9.7
RHH5269_R3641
9.9
Memory CD4 T-cell Th2 nTPM: 20.9
Samples: 4
Max nTPM: 31.1
Min nTPM: 15.3
RHH5305_R3671
17.6
RHH5213_R3584
19.4
RHH5241_R3613
31.1
RHH5270_R3642
15.3
Naive CD4 T-cell nTPM: 38.1
Samples: 4
Max nTPM: 48.9
Min nTPM: 29.2
RHH5306_R3672
48.9
RHH5214_R3585
33.8
RHH5242_R3614
29.2
RHH5271_R3643
40.5
Naive CD8 T-cell nTPM: 37.4
Samples: 4
Max nTPM: 50.6
Min nTPM: 16.3
RHH5201_R3572
50.6
RHH5229_R3601
16.3
RHH5258_R3630
48.8
RHH5287_R3659
34.0
Non-Vd2 gdTCR nTPM: 23.9
Samples: 4
Max nTPM: 31.9
Min nTPM: 10.8
RHH5235_R3607
10.8
RHH5264_R3636
29.2
RHH5207_R3578
31.9
RHH5299_R3665
23.7
T-reg nTPM: 28.1
Samples: 4
Max nTPM: 32.6
Min nTPM: 24.7
RHH5301_R3667
29.3
RHH5237_R3609
32.6
RHH5266_R3638
24.7
RHH5209_R3580
25.6
Terminal effector memory CD4 T-cell nTPM: 16.5
Samples: 2
Max nTPM: 22.5
Min nTPM: 10.4
RHH5243_R3615
10.4
RHH5272_R3644
22.5
Terminal effector memory CD8 T-cell nTPM: 17.6
Samples: 4
Max nTPM: 24.7
Min nTPM: 11.3
RHH5232_R3604
23.1
RHH5204_R3575
24.7
RHH5261_R3633
11.3
RHH5296_R3662
11.3
Vd2 gdTCR nTPM: 18.8
Samples: 4
Max nTPM: 24.6
Min nTPM: 10.8
RHH5234_R3606
10.8
RHH5206_R3577
24.6
RHH5263_R3635
17.8
RHH5298_R3664
22.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
