MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA Brain:65.4 nTPM
GTEx:18.0 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:11.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2586 Male, age 75, left hemisphere 80.9
1827 Male, age 72, unknown 65.5
2828 Female, age 72, unknown 63.9
2019 Male, age 18, unknown 62.5
2219 Male, age 76, both hemispheres 62.4
2666 Male, age 74, left hemisphere 60.2
1830 Male, age 51, unknown 57.0
2411 Female, age 72, unknown 56.9
1833 Male, age 53, unknown 54.9
1870 Female, age 42, unknown 52.4
Dorsal raphe nucleus
nTPM: 52.0
2047 Male, age 72, unknown 53.5
1828 Male, age 53, unknown 52.9
2298 Female, age 72, unknown 52.2
2016 Female, age 72, unknown 50.9
2750 Male, age 76, both hemispheres 50.6
Inferior colliculus
nTPM: 62.0
2097 Female, age 72, unknown 65.9
1848 Female, age 42, unknown 64.5
1890 Male, age 53, unknown 61.1
2849 Male, age 72, unknown 56.7
Median raphe nucleus
nTPM: 46.3
2220 Male, age 76, midline 46.3
Periaquaductal grey, anterior
nTPM: 65.4
2502 Female, age 75, unknown 68.6
1947 Male, age 18, unknown 65.7
1795 Male, age 51, unknown 62.0
Periaquaductal grey, dorsal
nTPM: 54.7
1831 Male, age 72, unknown 59.5
1840 Male, age 53, unknown 58.9
2464 Female, age 72, unknown 57.8
2850 Male, age 76, both hemispheres 42.5
Periaquaductal grey, lateral
nTPM: 53.9
2053 Male, age 18, unknown 58.9
2272 Male, age 74, both hemispheres 51.8
2140 Male, age 76, both hemispheres 50.9
Pretectal area
nTPM: 63.1
1816 Male, age 51, unknown 76.4
2007 Male, age 72, unknown 72.1
1817 Female, age 42, unknown 69.7
2407 Male, age 75, both hemispheres 67.5
1944 Female, age 72, unknown 65.9
1815 Male, age 53, unknown 62.4
2316 Male, age 76, right hemisphere 59.9
2667 Female, age 75, unknown 59.3
2825 Male, age 18, unknown 56.2
2273 Male, age 74, both hemispheres 52.7
2224 Female, age 72, unknown 51.5
Red nucleus
nTPM: 56.7
2584 Male, age 75, left hemisphere 70.5
2588 Male, age 74, left hemisphere 68.1
2785 Male, age 18, unknown 61.8
2769 Male, age 72, unknown 57.7
1904 Male, age 53, unknown 56.2
2227 Male, age 72, unknown 55.4
1954 Female, age 42, unknown 54.6
2823 Male, age 76, right hemisphere 53.8
2503 Female, age 72, unknown 52.8
1865 Male, age 51, unknown 52.3
1821 Female, age 72, unknown 50.8
2725 Female, age 75, unknown 46.8
Substantia nigra
nTPM: 50.5
2583 Male, age 75, right hemisphere 67.9
1889 Female, age 72, unknown 57.6
2590 Female, age 75, unknown 55.7
1941 Male, age 53, unknown 54.9
2665 Male, age 74, both hemispheres 52.6
1851 Male, age 51, unknown 46.5
1916 Female, age 42, unknown 45.0
2409 Female, age 72, unknown 42.9
2241 Male, age 72, unknown 41.2
2699 Male, age 18, unknown 41.2
Superior colliculus
nTPM: 63.9
2664 Male, age 75, both hemispheres 77.7
2261 Male, age 18, unknown 69.5
2668 Female, age 75, unknown 69.0
2087 Female, age 72, unknown 65.4
1895 Male, age 76, right hemisphere 63.9
1839 Male, age 51, unknown 61.4
1796 Male, age 53, unknown 60.5
1995 Male, age 72, unknown 60.0
1913 Female, age 42, unknown 58.6
2587 Male, age 74, left hemisphere 52.9
Ventral tegmental area
nTPM: 50.3
1942 Male, age 51, unknown 55.7
2223 Female, age 72, unknown 55.3
2410 Female, age 72, unknown 49.9
2021 Male, age 53, unknown 49.2
2218 Male, age 76, both hemispheres 46.2
1915 Female, age 42, unknown 45.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.0
Samples: 139

Max nTPM: 34.3
Min nTPM: 7.4
Std nTPM: 4.7
Median nTPM: 17.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 34.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 28.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 27.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 26.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.5
Sample A Female 19.2
Sample B Female 16.4
Sample C Male 20.6
Sample D Male 15.5
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 28.8
Min nTPM: 13.8
Sample A Female 17.3
Sample B Female 13.8
Sample C Male 28.8
Sample D Male 19.9
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 15.5
Min nTPM: 13.5
Sample B Female 14.3
Sample C Male 15.5
Sample D Male 13.5
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.0
Sample A Female 17.6
Sample B Female 17.0
Sample C Male 23.3
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.5
Sample A Male 9.5
Sample B Male 11.1
Sample C Female 12.6
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69448722 Antisense, RP_050419_02_G10, Mouse strain C57BL/6J (56 days, male) 0.7
74881514 Antisense, RP_060315_04_C02, Mouse strain C57BL/6J (56 days, male) 0.5

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