MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.1 nTPM
HPA Brain:16.3 nTPM
GTEx:12.1 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:23.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2411 Female, age 72, unknown 18.0
2019 Male, age 18, unknown 17.7
1870 Female, age 42, unknown 17.1
1830 Male, age 51, unknown 15.7
1827 Male, age 72, unknown 15.4
1833 Male, age 53, unknown 15.1
2828 Female, age 72, unknown 15.1
2666 Male, age 74, left hemisphere 14.5
2219 Male, age 76, both hemispheres 13.7
2586 Male, age 75, left hemisphere 13.2
Dorsal raphe nucleus
nTPM: 16.2
2750 Male, age 76, both hemispheres 17.5
2016 Female, age 72, unknown 16.5
2298 Female, age 72, unknown 16.3
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 14.9
Inferior colliculus
nTPM: 13.6
2097 Female, age 72, unknown 14.6
1848 Female, age 42, unknown 13.6
1890 Male, age 53, unknown 13.2
2849 Male, age 72, unknown 12.8
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Periaquaductal grey, anterior
nTPM: 13.7
2502 Female, age 75, unknown 14.3
1947 Male, age 18, unknown 14.1
1795 Male, age 51, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 13.8
2850 Male, age 76, both hemispheres 14.4
2464 Female, age 72, unknown 14.3
1840 Male, age 53, unknown 14.1
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 13.9
2272 Male, age 74, both hemispheres 14.8
2140 Male, age 76, both hemispheres 14.0
2053 Male, age 18, unknown 13.0
Pretectal area
nTPM: 14.2
1815 Male, age 53, unknown 17.3
2007 Male, age 72, unknown 15.9
1817 Female, age 42, unknown 15.6
2273 Male, age 74, both hemispheres 15.6
2224 Female, age 72, unknown 14.7
2316 Male, age 76, right hemisphere 13.7
1816 Male, age 51, unknown 12.9
2825 Male, age 18, unknown 12.8
1944 Female, age 72, unknown 12.7
2407 Male, age 75, both hemispheres 12.7
2667 Female, age 75, unknown 12.7
Red nucleus
nTPM: 15.8
1821 Female, age 72, unknown 18.2
1865 Male, age 51, unknown 17.7
2785 Male, age 18, unknown 17.0
2503 Female, age 72, unknown 16.6
2227 Male, age 72, unknown 16.2
2769 Male, age 72, unknown 16.2
1954 Female, age 42, unknown 15.7
2588 Male, age 74, left hemisphere 15.1
2725 Female, age 75, unknown 15.0
1904 Male, age 53, unknown 14.9
2823 Male, age 76, right hemisphere 14.3
2584 Male, age 75, left hemisphere 12.4
Substantia nigra
nTPM: 16.3
1851 Male, age 51, unknown 17.9
2241 Male, age 72, unknown 17.7
1916 Female, age 42, unknown 17.1
2665 Male, age 74, both hemispheres 16.8
2409 Female, age 72, unknown 16.5
2590 Female, age 75, unknown 16.5
2699 Male, age 18, unknown 15.6
1889 Female, age 72, unknown 15.5
1941 Male, age 53, unknown 14.7
2583 Male, age 75, right hemisphere 14.6
Superior colliculus
nTPM: 13.9
2587 Male, age 74, left hemisphere 16.7
1796 Male, age 53, unknown 15.5
2668 Female, age 75, unknown 15.1
1913 Female, age 42, unknown 14.3
1839 Male, age 51, unknown 14.1
1995 Male, age 72, unknown 13.7
1895 Male, age 76, right hemisphere 13.6
2261 Male, age 18, unknown 13.5
2087 Female, age 72, unknown 11.5
2664 Male, age 75, both hemispheres 11.3
Ventral tegmental area
nTPM: 16.1
2410 Female, age 72, unknown 18.4
2223 Female, age 72, unknown 17.6
2218 Male, age 76, both hemispheres 15.9
1915 Female, age 42, unknown 15.6
1942 Male, age 51, unknown 14.8
2021 Male, age 53, unknown 14.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.1
Samples: 139

Max nTPM: 18.9
Min nTPM: 7.6
Std nTPM: 2.4
Median nTPM: 11.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 18.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 18.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 17.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 16.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 16.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.7
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.4
Sample A Female 31.7
Sample B Female 21.4
Sample C Male 28.2
Sample D Male 25.4
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.6
Sample A Female 35.3
Sample B Female 26.5
Sample C Male 25.6
Sample D Male 23.6
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 23.8
Min nTPM: 19.9
Sample B Female 21.7
Sample C Male 23.8
Sample D Male 19.9
Superior colliculi
nTPM: 27.4
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.5
Sample A Female 29.6
Sample B Female 23.5
Sample C Male 31.1
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 22.1
Sample A Male 23.5
Sample B Male 23.4
Sample C Female 22.1
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
77800951 Antisense, RP_070219_01_B11, Mouse strain C57BL/6J (56 days, male) 1.7
68441568 Antisense, RP_041214_02_F02, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org