MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.0 nTPM
HPA Brain:5.3 nTPM
GTEx:75.0 nTPM
FANTOM5:22.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.3
2219 Male, age 76, both hemispheres 30.6
1830 Male, age 51, unknown 3.2
1833 Male, age 53, unknown 3.0
1827 Male, age 72, unknown 2.9
2411 Female, age 72, unknown 2.8
1870 Female, age 42, unknown 2.7
2828 Female, age 72, unknown 2.2
2666 Male, age 74, left hemisphere 2.1
2019 Male, age 18, unknown 2.0
2586 Male, age 75, left hemisphere 1.8
Dorsal raphe nucleus
nTPM: 4.2
2016 Female, age 72, unknown 6.7
2298 Female, age 72, unknown 6.5
1828 Male, age 53, unknown 3.0
2047 Male, age 72, unknown 2.9
2750 Male, age 76, both hemispheres 2.1
Inferior colliculus
nTPM: 3.1
2097 Female, age 72, unknown 4.0
1890 Male, age 53, unknown 3.0
2849 Male, age 72, unknown 2.9
1848 Female, age 42, unknown 2.7
Median raphe nucleus
nTPM: 2.1
2220 Male, age 76, midline 2.1
Periaquaductal grey, anterior
nTPM: 2.8
1795 Male, age 51, unknown 3.6
2502 Female, age 75, unknown 2.7
1947 Male, age 18, unknown 2.1
Periaquaductal grey, dorsal
nTPM: 2.8
2464 Female, age 72, unknown 3.1
1840 Male, age 53, unknown 3.0
1831 Male, age 72, unknown 2.9
2850 Male, age 76, both hemispheres 2.2
Periaquaductal grey, lateral
nTPM: 2.9
2053 Male, age 18, unknown 4.6
2140 Male, age 76, both hemispheres 2.1
2272 Male, age 74, both hemispheres 2.1
Pretectal area
nTPM: 2.6
2224 Female, age 72, unknown 4.3
1815 Male, age 53, unknown 3.0
2007 Male, age 72, unknown 2.9
1817 Female, age 42, unknown 2.7
2667 Female, age 75, unknown 2.7
2825 Male, age 18, unknown 2.7
2407 Male, age 75, both hemispheres 2.6
1944 Female, age 72, unknown 2.4
2273 Male, age 74, both hemispheres 2.1
2316 Male, age 76, right hemisphere 2.1
1816 Male, age 51, unknown 0.6
Red nucleus
nTPM: 2.8
2503 Female, age 72, unknown 4.6
1865 Male, age 51, unknown 3.4
1821 Female, age 72, unknown 3.1
1904 Male, age 53, unknown 3.0
2227 Male, age 72, unknown 2.9
2769 Male, age 72, unknown 2.9
1954 Female, age 42, unknown 2.7
2725 Female, age 75, unknown 2.7
2588 Male, age 74, left hemisphere 2.1
2823 Male, age 76, right hemisphere 2.1
2584 Male, age 75, left hemisphere 1.9
2785 Male, age 18, unknown 1.7
Substantia nigra
nTPM: 3.2
2699 Male, age 18, unknown 6.1
1851 Male, age 51, unknown 4.1
2409 Female, age 72, unknown 3.6
2583 Male, age 75, right hemisphere 3.6
1941 Male, age 53, unknown 3.0
2241 Male, age 72, unknown 2.9
1916 Female, age 42, unknown 2.7
2590 Female, age 75, unknown 2.7
2665 Male, age 74, both hemispheres 2.1
1889 Female, age 72, unknown 1.1
Superior colliculus
nTPM: 2.5
1796 Male, age 53, unknown 3.0
1995 Male, age 72, unknown 3.0
2664 Male, age 75, both hemispheres 3.0
1913 Female, age 42, unknown 2.7
2668 Female, age 75, unknown 2.7
1839 Male, age 51, unknown 2.5
2087 Female, age 72, unknown 2.3
1895 Male, age 76, right hemisphere 2.1
2587 Male, age 74, left hemisphere 2.1
2261 Male, age 18, unknown 1.8
Ventral tegmental area
nTPM: 3.1
2410 Female, age 72, unknown 4.2
1942 Male, age 51, unknown 3.9
2021 Male, age 53, unknown 3.0
2223 Female, age 72, unknown 3.0
1915 Female, age 42, unknown 2.7
2218 Male, age 76, both hemispheres 2.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.0
Samples: 139

Max nTPM: 382.6
Min nTPM: 10.2
Std nTPM: 53.7
Median nTPM: 59.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 382.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 232.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 209.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 190.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 179.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 176.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 175.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 171.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 169.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 150.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 144.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.0
FF:10158-103A5 76 years, female 22.0

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