BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:49.4 nTPM
GTEx:8.0 nTPM
FANTOM5:85.4 Scaled Tags Per Million
Pig:48.5 nTPM
Mouse:6.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052589
Glial cells Medium
Neuronal cells Medium

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.5
2846 Female, age 79, unknown 48.5
1857 Female, age 85, left hemisphere 44.3
2288 Male, age 75, left hemisphere 44.2
1854 Male, age 80, left hemisphere 43.3
1781 Male, age 74, unknown 43.2
2481 Female, age 94, left hemisphere 41.0
2290 Female, age 72, unknown 39.6
2289 Male, age 61, right hemisphere 36.0
Globus pallidus, externus
nTPM: 46.0
2395 Male, age 75, both hemispheres 49.6
2567 Female, age 72, unknown 48.6
1996 Male, age 80, right hemisphere 46.4
2646 Male, age 61, right hemisphere 43.4
2772 Female, age 79, unknown 41.8
Globus pallidus, internus
nTPM: 49.4
2483 Female, age 94, right hemisphere 62.2
2287 Male, age 75, right hemisphere 56.4
2566 Female, age 72, unknown 48.3
2111 Female, age 85, right hemisphere 47.9
2778 Female, age 91, both hemispheres 46.1
1818 Male, age 74, unknown 43.5
2037 Male, age 80, right hemisphere 41.1
Nucleus accumbens
nTPM: 44.1
1783 Male, age 74, unknown 49.5
2391 Female, age 94, left hemisphere 46.9
2698 Female, age 72, unknown 45.5
1806 Female, age 85, left hemisphere 44.4
1856 Female, age 91, right hemisphere 43.6
2286 Male, age 75, left hemisphere 43.5
2824 Male, age 61, right hemisphere 40.4
2732 Male, age 80, right hemisphere 38.6
Nucleus basalis of Meynert
nTPM: 42.4
2569 Male, age 61, both hemispheres 47.4
2484 Female, age 94, left hemisphere 43.7
2393 Male, age 80, right hemisphere 41.7
2821 Male, age 75, both hemispheres 36.7
Nucleus of the diagonal band
nTPM: 41.5
2775 Male, age 80, right hemisphere 46.7
1812 Female, age 91, both hemispheres 41.3
2195 Female, age 85, both hemispheres 41.0
2029 Male, age 61, right hemisphere 39.8
1979 Male, age 74, unknown 38.7
Putamen
nTPM: 45.0
2482 Female, age 94, left hemisphere 48.8
1829 Male, age 74, unknown 48.3
2466 Female, age 79, unknown 45.7
2647 Male, age 75, left hemisphere 44.8
1937 Female, age 91, right hemisphere 43.6
2489 Female, age 72, unknown 43.4
1838 Male, age 80, right hemisphere 40.5
Septal nuclei
nTPM: 39.2
2031 Female, age 72, unknown 46.7
1960 Male, age 74, unknown 43.5
2394 Male, age 61, left hemisphere 39.8
2009 Female, age 91, both hemispheres 39.6
2629 Female, age 94, right hemisphere 36.8
2199 Male, age 80, right hemisphere 34.4
2059 Female, age 85, both hemispheres 33.7
Stria terminalis, bed nucleus
nTPM: 39.1
1974 Female, age 91, both hemispheres 42.5
2201 Male, age 74, unknown 38.7
2486 Female, age 94, both hemispheres 36.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 15.4
Min nTPM: 3.7
Std nTPM: 1.9
Median nTPM: 7.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 15.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 15.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 14.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 14.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 11.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 11.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 11.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 11.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 11.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 11.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 11.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 17.7
Min nTPM: 2.4
Std nTPM: 2.0
Median nTPM: 6.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 17.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 14.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 12.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 12.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 12.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 11.5
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 11.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 10.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 10.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 10.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 8.0
Samples: 205

Max nTPM: 18.3
Min nTPM: 2.8
Std nTPM: 2.3
Median nTPM: 7.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 18.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 16.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 15.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 15.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 15.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 14.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 14.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 13.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 12.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 12.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 12.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.4
FF:10164-103B2 76 years, female 85.4
Nucleus accumbens
Scaled Tags Per Million: 40.3
FF:10037-101F1 23-56 years, mixed 40.3
Putamen
Scaled Tags Per Million: 72.5
FF:10176-103C5 60 years, female 72.5
Globus pallidus
Scaled Tags Per Million: 66.1
FF:10161-103A8 76 years, female 87.5
FF:10175-103C4 60 years, female 44.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.5
Pig sample Sample description nTPM
Caudate
nTPM: 42.8
Samples: 4

Max nTPM: 44.4
Min nTPM: 39.0
Sample A Female 44.4
Sample B Female 43.5
Sample C Male 44.4
Sample D Male 39.0
Putamen
nTPM: 48.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 42.4
Sample A Female 50.5
Sample B Female 42.4
Sample C Male 56.5
Sample D Male 44.6
Septum
nTPM: 48.5
Samples: 4

Max nTPM: 56.3
Min nTPM: 42.1
Sample A Female 48.0
Sample B Female 47.6
Sample C Male 56.3
Sample D Male 42.1
Ventral pallidum
nTPM: 44.2
Samples: 4

Max nTPM: 50.7
Min nTPM: 40.2
Sample A Female 43.2
Sample B Female 50.7
Sample C Male 42.7
Sample D Male 40.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.0
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.5
Sample A Male 6.6
Sample B Male 6.1
Sample C Female 5.5
Sample D Female 5.8
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.0
Sample A Male 5.4
Sample B Male 5.8
Sample C Female 5.0
Sample D Female 6.0
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.9
Sample A Male 5.1
Sample B Male 5.2
Sample C Female 5.3
Sample D Female 4.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69529089 Antisense, RP_050421_03_E01, Mouse strain C57BL/6J (56 days, male) 0.3
71283559 Antisense, RP_050825_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69529089 Antisense, RP_050421_03_E01, Mouse strain C57BL/6J (56 days, male) 0.2
71283559 Antisense, RP_050825_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org