MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:13.1 nTPM
GTEx:7.1 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:26.7 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
1827 Male, age 72, unknown 10.7
1870 Female, age 42, unknown 10.1
2411 Female, age 72, unknown 8.9
1833 Male, age 53, unknown 7.7
2219 Male, age 76, both hemispheres 7.7
2666 Male, age 74, left hemisphere 7.3
1830 Male, age 51, unknown 6.7
2586 Male, age 75, left hemisphere 6.7
2828 Female, age 72, unknown 5.6
2019 Male, age 18, unknown 1.8
Dorsal raphe nucleus
nTPM: 11.2
2047 Male, age 72, unknown 15.4
2298 Female, age 72, unknown 14.9
2016 Female, age 72, unknown 8.8
2750 Male, age 76, both hemispheres 8.8
1828 Male, age 53, unknown 7.9
Inferior colliculus
nTPM: 9.8
2849 Male, age 72, unknown 11.1
2097 Female, age 72, unknown 10.5
1848 Female, age 42, unknown 9.5
1890 Male, age 53, unknown 7.9
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Periaquaductal grey, anterior
nTPM: 10.3
1947 Male, age 18, unknown 12.4
1795 Male, age 51, unknown 10.3
2502 Female, age 75, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 10.7
1840 Male, age 53, unknown 17.2
2850 Male, age 76, both hemispheres 10.1
2464 Female, age 72, unknown 9.0
1831 Male, age 72, unknown 6.5
Periaquaductal grey, lateral
nTPM: 8.3
2053 Male, age 18, unknown 11.3
2140 Male, age 76, both hemispheres 8.0
2272 Male, age 74, both hemispheres 5.7
Pretectal area
nTPM: 7.8
2224 Female, age 72, unknown 15.8
2825 Male, age 18, unknown 15.7
2667 Female, age 75, unknown 10.2
2273 Male, age 74, both hemispheres 6.7
1816 Male, age 51, unknown 6.6
2316 Male, age 76, right hemisphere 6.5
2407 Male, age 75, both hemispheres 5.8
1944 Female, age 72, unknown 5.6
2007 Male, age 72, unknown 4.8
1817 Female, age 42, unknown 4.1
1815 Male, age 53, unknown 3.8
Red nucleus
nTPM: 3.5
2584 Male, age 75, left hemisphere 8.2
2588 Male, age 74, left hemisphere 4.3
1821 Female, age 72, unknown 3.7
1954 Female, age 42, unknown 3.7
2227 Male, age 72, unknown 3.7
2769 Male, age 72, unknown 3.5
2503 Female, age 72, unknown 3.3
2725 Female, age 75, unknown 3.1
2823 Male, age 76, right hemisphere 2.7
1904 Male, age 53, unknown 2.2
1865 Male, age 51, unknown 2.1
2785 Male, age 18, unknown 1.7
Substantia nigra
nTPM: 9.6
2241 Male, age 72, unknown 16.3
1916 Female, age 42, unknown 10.4
2665 Male, age 74, both hemispheres 10.4
1941 Male, age 53, unknown 9.4
2409 Female, age 72, unknown 9.4
2699 Male, age 18, unknown 9.3
1851 Male, age 51, unknown 9.2
2590 Female, age 75, unknown 8.2
1889 Female, age 72, unknown 7.2
2583 Male, age 75, right hemisphere 6.3
Superior colliculus
nTPM: 6.7
1796 Male, age 53, unknown 10.5
1839 Male, age 51, unknown 9.8
2261 Male, age 18, unknown 8.4
2664 Male, age 75, both hemispheres 7.8
1895 Male, age 76, right hemisphere 7.4
2668 Female, age 75, unknown 6.4
2587 Male, age 74, left hemisphere 6.1
2087 Female, age 72, unknown 5.6
1913 Female, age 42, unknown 3.0
1995 Male, age 72, unknown 2.3
Ventral tegmental area
nTPM: 10.7
2021 Male, age 53, unknown 13.3
1915 Female, age 42, unknown 12.1
1942 Male, age 51, unknown 10.5
2223 Female, age 72, unknown 10.5
2218 Male, age 76, both hemispheres 9.3
2410 Female, age 72, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.1
Samples: 139

Max nTPM: 19.9
Min nTPM: 0.8
Std nTPM: 3.5
Median nTPM: 6.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 15.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.2
Samples: 4

Max nTPM: 6.1
Min nTPM: 1.9
Sample A Female 6.1
Sample B Female 2.7
Sample C Male 5.9
Sample D Male 1.9
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 4.2
Sample C Male 5.0
Sample D Male 4.5
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 6.2
Min nTPM: 3.5
Sample B Female 3.5
Sample C Male 6.2
Sample D Male 4.6
Superior colliculi
nTPM: 3.0
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.4
Sample A Female 3.3
Sample B Female 1.4
Sample C Male 4.0
Sample D Male 3.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.7
Sample A Male 26.2
Sample B Male 28.5
Sample C Female 25.7
Sample D Female 26.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
71656792 Antisense, RP_050927_04_C12, Mouse strain C57BL/6J (56 days, male) 5.5

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