MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:21.3 nTPM
GTEx:9.8 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:3.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2586 Male, age 75, left hemisphere 23.9
2828 Female, age 72, unknown 23.5
1830 Male, age 51, unknown 21.8
1833 Male, age 53, unknown 21.3
2411 Female, age 72, unknown 20.7
2019 Male, age 18, unknown 19.9
1870 Female, age 42, unknown 19.4
2219 Male, age 76, both hemispheres 18.9
2666 Male, age 74, left hemisphere 17.7
1827 Male, age 72, unknown 17.0
Dorsal raphe nucleus
nTPM: 16.8
2750 Male, age 76, both hemispheres 18.5
2016 Female, age 72, unknown 17.1
1828 Male, age 53, unknown 16.5
2047 Male, age 72, unknown 16.2
2298 Female, age 72, unknown 15.8
Inferior colliculus
nTPM: 15.6
1890 Male, age 53, unknown 17.3
1848 Female, age 42, unknown 15.7
2849 Male, age 72, unknown 15.6
2097 Female, age 72, unknown 13.9
Median raphe nucleus
nTPM: 12.5
2220 Male, age 76, midline 12.5
Periaquaductal grey, anterior
nTPM: 19.2
2502 Female, age 75, unknown 22.1
1795 Male, age 51, unknown 17.8
1947 Male, age 18, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 14.3
2464 Female, age 72, unknown 17.1
1831 Male, age 72, unknown 14.8
1840 Male, age 53, unknown 12.9
2850 Male, age 76, both hemispheres 12.5
Periaquaductal grey, lateral
nTPM: 16.7
2053 Male, age 18, unknown 16.8
2272 Male, age 74, both hemispheres 16.8
2140 Male, age 76, both hemispheres 16.5
Pretectal area
nTPM: 17.5
2667 Female, age 75, unknown 20.0
2407 Male, age 75, both hemispheres 19.7
2316 Male, age 76, right hemisphere 19.2
1815 Male, age 53, unknown 18.9
2007 Male, age 72, unknown 18.5
1817 Female, age 42, unknown 16.9
2273 Male, age 74, both hemispheres 16.6
2224 Female, age 72, unknown 16.4
1816 Male, age 51, unknown 15.7
1944 Female, age 72, unknown 15.4
2825 Male, age 18, unknown 15.2
Red nucleus
nTPM: 21.3
2769 Male, age 72, unknown 25.2
2785 Male, age 18, unknown 24.3
2227 Male, age 72, unknown 23.8
2588 Male, age 74, left hemisphere 22.9
1865 Male, age 51, unknown 22.5
2503 Female, age 72, unknown 22.0
2823 Male, age 76, right hemisphere 21.4
1904 Male, age 53, unknown 21.3
1954 Female, age 42, unknown 19.1
1821 Female, age 72, unknown 18.6
2584 Male, age 75, left hemisphere 18.3
2725 Female, age 75, unknown 16.5
Substantia nigra
nTPM: 14.9
2583 Male, age 75, right hemisphere 19.1
1889 Female, age 72, unknown 16.6
2699 Male, age 18, unknown 16.4
1851 Male, age 51, unknown 16.2
2665 Male, age 74, both hemispheres 15.1
2590 Female, age 75, unknown 14.4
2409 Female, age 72, unknown 14.2
1916 Female, age 42, unknown 13.7
1941 Male, age 53, unknown 13.1
2241 Male, age 72, unknown 9.8
Superior colliculus
nTPM: 18.9
1995 Male, age 72, unknown 23.0
1913 Female, age 42, unknown 22.7
2664 Male, age 75, both hemispheres 20.3
1895 Male, age 76, right hemisphere 18.8
1796 Male, age 53, unknown 18.6
2668 Female, age 75, unknown 18.4
2261 Male, age 18, unknown 18.3
1839 Male, age 51, unknown 17.1
2587 Male, age 74, left hemisphere 16.0
2087 Female, age 72, unknown 15.6
Ventral tegmental area
nTPM: 15.8
1942 Male, age 51, unknown 16.4
2223 Female, age 72, unknown 16.1
2218 Male, age 76, both hemispheres 16.0
2021 Male, age 53, unknown 15.7
2410 Female, age 72, unknown 15.6
1915 Female, age 42, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 20.7
Min nTPM: 4.7
Std nTPM: 2.8
Median nTPM: 9.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 15.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 15.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.2
FF:10158-103A5 76 years, female 71.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.2
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 3.0
Sample C Male 3.2
Sample D Male 4.1
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 3.4
Sample C Male 3.5
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.0
Min nTPM: 3.7
Sample B Female 3.7
Sample C Male 4.0
Sample D Male 3.9
Superior colliculi
nTPM: 3.1
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 3.8
Sample C Male 3.0
Sample D Male 3.3

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