MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.9 nTPM
HPA Brain:80.4 nTPM
GTEx:109.9 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:68.9 nTPM
Mouse:40.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.5
2586 Male, age 75, left hemisphere 104.1
1827 Male, age 72, unknown 78.1
2666 Male, age 74, left hemisphere 76.4
2019 Male, age 18, unknown 65.0
2828 Female, age 72, unknown 64.4
1870 Female, age 42, unknown 62.1
2411 Female, age 72, unknown 60.9
1833 Male, age 53, unknown 58.6
2219 Male, age 76, both hemispheres 55.2
1830 Male, age 51, unknown 50.8
Dorsal raphe nucleus
nTPM: 67.3
2298 Female, age 72, unknown 79.8
2047 Male, age 72, unknown 67.9
1828 Male, age 53, unknown 66.5
2750 Male, age 76, both hemispheres 63.1
2016 Female, age 72, unknown 59.2
Inferior colliculus
nTPM: 75.7
2097 Female, age 72, unknown 85.7
2849 Male, age 72, unknown 73.7
1890 Male, age 53, unknown 72.1
1848 Female, age 42, unknown 71.3
Median raphe nucleus
nTPM: 80.4
2220 Male, age 76, midline 80.4
Periaquaductal grey, anterior
nTPM: 79.7
1795 Male, age 51, unknown 83.5
1947 Male, age 18, unknown 81.6
2502 Female, age 75, unknown 73.9
Periaquaductal grey, dorsal
nTPM: 66.8
1840 Male, age 53, unknown 79.9
2464 Female, age 72, unknown 63.9
2850 Male, age 76, both hemispheres 63.9
1831 Male, age 72, unknown 59.6
Periaquaductal grey, lateral
nTPM: 58.9
2053 Male, age 18, unknown 60.7
2140 Male, age 76, both hemispheres 60.6
2272 Male, age 74, both hemispheres 55.5
Pretectal area
nTPM: 73.1
2007 Male, age 72, unknown 89.6
1816 Male, age 51, unknown 89.4
1817 Female, age 42, unknown 83.6
1944 Female, age 72, unknown 81.3
2825 Male, age 18, unknown 73.7
2224 Female, age 72, unknown 73.6
1815 Male, age 53, unknown 73.5
2667 Female, age 75, unknown 69.8
2407 Male, age 75, both hemispheres 62.4
2273 Male, age 74, both hemispheres 60.6
2316 Male, age 76, right hemisphere 46.4
Red nucleus
nTPM: 69.3
1821 Female, age 72, unknown 81.8
2588 Male, age 74, left hemisphere 77.3
2503 Female, age 72, unknown 76.3
2227 Male, age 72, unknown 72.0
2769 Male, age 72, unknown 71.6
1954 Female, age 42, unknown 71.3
2725 Female, age 75, unknown 69.7
2785 Male, age 18, unknown 69.2
1904 Male, age 53, unknown 64.9
1865 Male, age 51, unknown 64.1
2584 Male, age 75, left hemisphere 61.5
2823 Male, age 76, right hemisphere 52.4
Substantia nigra
nTPM: 77.4
1916 Female, age 42, unknown 102.7
1851 Male, age 51, unknown 86.9
2665 Male, age 74, both hemispheres 84.0
1889 Female, age 72, unknown 81.8
1941 Male, age 53, unknown 78.7
2241 Male, age 72, unknown 71.6
2409 Female, age 72, unknown 71.5
2583 Male, age 75, right hemisphere 67.2
2699 Male, age 18, unknown 66.0
2590 Female, age 75, unknown 63.1
Superior colliculus
nTPM: 68.6
2668 Female, age 75, unknown 89.7
2664 Male, age 75, both hemispheres 81.6
2087 Female, age 72, unknown 79.8
1796 Male, age 53, unknown 79.6
2261 Male, age 18, unknown 73.2
1839 Male, age 51, unknown 62.1
1895 Male, age 76, right hemisphere 60.3
2587 Male, age 74, left hemisphere 56.9
1913 Female, age 42, unknown 52.3
1995 Male, age 72, unknown 50.9
Ventral tegmental area
nTPM: 71.5
1915 Female, age 42, unknown 85.0
2410 Female, age 72, unknown 75.8
1942 Male, age 51, unknown 72.9
2223 Female, age 72, unknown 68.7
2218 Male, age 76, both hemispheres 66.4
2021 Male, age 53, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.9
Samples: 139

Max nTPM: 277.4
Min nTPM: 42.1
Std nTPM: 33.6
Median nTPM: 103.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 277.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 203.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 194.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 189.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 188.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 185.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 177.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 170.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 163.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 162.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 157.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 49.6
Min nTPM: 22.8
Sample A Female 49.6
Sample B Female 27.6
Sample C Male 49.0
Sample D Male 22.8
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 89.7
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 46.1
Sample C Male 72.8
Sample D Male 89.7
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 51.8
Min nTPM: 37.7
Sample B Female 39.5
Sample C Male 51.8
Sample D Male 37.7
Superior colliculi
nTPM: 68.9
Samples: 4

Max nTPM: 88.0
Min nTPM: 40.2
Sample A Female 88.0
Sample B Female 40.2
Sample C Male 79.4
Sample D Male 68.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 38.9
Sample A Male 41.8
Sample B Male 39.9
Sample C Female 38.9
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68545875 Antisense, RP_050120_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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