MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.1 nTPM
HPA Brain:5.0 nTPM
GTEx:25.1 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:84.7 nTPM
Mouse:35.9 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.2
2019 Male, age 18, unknown 4.1
1870 Female, age 42, unknown 3.8
2411 Female, age 72, unknown 3.7
2828 Female, age 72, unknown 3.6
1827 Male, age 72, unknown 3.4
2586 Male, age 75, left hemisphere 3.2
1833 Male, age 53, unknown 3.1
2219 Male, age 76, both hemispheres 2.8
2666 Male, age 74, left hemisphere 2.5
1830 Male, age 51, unknown 2.1
Dorsal raphe nucleus
nTPM: 5.0
2298 Female, age 72, unknown 7.3
2047 Male, age 72, unknown 6.4
2750 Male, age 76, both hemispheres 4.4
1828 Male, age 53, unknown 3.8
2016 Female, age 72, unknown 3.3
Inferior colliculus
nTPM: 3.7
2097 Female, age 72, unknown 5.2
1848 Female, age 42, unknown 3.7
1890 Male, age 53, unknown 3.3
2849 Male, age 72, unknown 2.8
Median raphe nucleus
nTPM: 4.8
2220 Male, age 76, midline 4.8
Periaquaductal grey, anterior
nTPM: 3.6
1947 Male, age 18, unknown 4.1
2502 Female, age 75, unknown 3.5
1795 Male, age 51, unknown 3.3
Periaquaductal grey, dorsal
nTPM: 2.9
1840 Male, age 53, unknown 4.1
2850 Male, age 76, both hemispheres 2.8
1831 Male, age 72, unknown 2.5
2464 Female, age 72, unknown 2.3
Periaquaductal grey, lateral
nTPM: 3.1
2140 Male, age 76, both hemispheres 4.0
2053 Male, age 18, unknown 2.9
2272 Male, age 74, both hemispheres 2.5
Pretectal area
nTPM: 4.0
1816 Male, age 51, unknown 6.3
1817 Female, age 42, unknown 5.5
2007 Male, age 72, unknown 5.2
1944 Female, age 72, unknown 4.3
1815 Male, age 53, unknown 4.0
2667 Female, age 75, unknown 4.0
2224 Female, age 72, unknown 3.9
2825 Male, age 18, unknown 2.9
2273 Male, age 74, both hemispheres 2.7
2316 Male, age 76, right hemisphere 2.5
2407 Male, age 75, both hemispheres 2.3
Red nucleus
nTPM: 3.0
1865 Male, age 51, unknown 3.9
1821 Female, age 72, unknown 3.7
2227 Male, age 72, unknown 3.5
2769 Male, age 72, unknown 3.3
2785 Male, age 18, unknown 3.2
2503 Female, age 72, unknown 3.1
1904 Male, age 53, unknown 3.0
1954 Female, age 42, unknown 2.9
2725 Female, age 75, unknown 2.9
2588 Male, age 74, left hemisphere 2.5
2823 Male, age 76, right hemisphere 2.3
2584 Male, age 75, left hemisphere 1.9
Substantia nigra
nTPM: 3.3
1916 Female, age 42, unknown 4.8
1889 Female, age 72, unknown 4.2
1941 Male, age 53, unknown 4.1
2583 Male, age 75, right hemisphere 3.7
2665 Male, age 74, both hemispheres 3.7
1851 Male, age 51, unknown 3.5
2590 Female, age 75, unknown 3.0
2241 Male, age 72, unknown 2.3
2699 Male, age 18, unknown 1.9
2409 Female, age 72, unknown 1.8
Superior colliculus
nTPM: 3.0
2087 Female, age 72, unknown 4.3
2261 Male, age 18, unknown 4.1
1895 Male, age 76, right hemisphere 3.1
2668 Female, age 75, unknown 3.1
1913 Female, age 42, unknown 3.0
1796 Male, age 53, unknown 2.9
2587 Male, age 74, left hemisphere 2.8
2664 Male, age 75, both hemispheres 2.4
1995 Male, age 72, unknown 2.2
1839 Male, age 51, unknown 1.8
Ventral tegmental area
nTPM: 4.5
2410 Female, age 72, unknown 6.7
1942 Male, age 51, unknown 4.6
2223 Female, age 72, unknown 4.4
2218 Male, age 76, both hemispheres 4.3
1915 Female, age 42, unknown 3.9
2021 Male, age 53, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 53.5
Min nTPM: 11.5
Std nTPM: 6.7
Median nTPM: 24.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 53.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 38.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 36.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 34.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.8
Samples: 4

Max nTPM: 106.7
Min nTPM: 70.0
Sample A Female 106.7
Sample B Female 73.4
Sample C Male 88.9
Sample D Male 70.0
Midbrain
nTPM: 83.5
Samples: 4

Max nTPM: 103.3
Min nTPM: 68.4
Sample A Female 103.3
Sample B Female 82.7
Sample C Male 79.6
Sample D Male 68.4
Periaqueductal gray
nTPM: 69.8
Samples: 3

Max nTPM: 75.1
Min nTPM: 64.0
Sample B Female 70.3
Sample C Male 75.1
Sample D Male 64.0
Superior colliculi
nTPM: 81.2
Samples: 4

Max nTPM: 100.3
Min nTPM: 63.4
Sample A Female 100.3
Sample B Female 63.4
Sample C Male 85.7
Sample D Male 75.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 42.1
Min nTPM: 29.9
Sample A Male 42.1
Sample B Male 32.0
Sample C Female 29.9
Sample D Female 39.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71662899 Antisense, RP_050927_04_F03, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org