MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:26.1 nTPM
GTEx:3.8 nTPM
FANTOM5:20.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.1
2666 Male, age 74, left hemisphere 27.7
2586 Male, age 75, left hemisphere 26.8
1830 Male, age 51, unknown 26.1
1833 Male, age 53, unknown 26.1
1870 Female, age 42, unknown 25.5
2411 Female, age 72, unknown 25.0
1827 Male, age 72, unknown 24.8
2219 Male, age 76, both hemispheres 24.8
2828 Female, age 72, unknown 24.1
2019 Male, age 18, unknown 19.9
Dorsal raphe nucleus
nTPM: 21.8
2750 Male, age 76, both hemispheres 25.5
2047 Male, age 72, unknown 22.8
2016 Female, age 72, unknown 21.4
1828 Male, age 53, unknown 21.0
2298 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 23.9
2849 Male, age 72, unknown 24.9
1890 Male, age 53, unknown 24.4
1848 Female, age 42, unknown 23.9
2097 Female, age 72, unknown 22.3
Median raphe nucleus
nTPM: 18.0
2220 Male, age 76, midline 18.0
Periaquaductal grey, anterior
nTPM: 23.9
1947 Male, age 18, unknown 26.6
1795 Male, age 51, unknown 22.7
2502 Female, age 75, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 22.8
2464 Female, age 72, unknown 25.9
1840 Male, age 53, unknown 23.8
1831 Male, age 72, unknown 21.2
2850 Male, age 76, both hemispheres 20.5
Periaquaductal grey, lateral
nTPM: 23.1
2053 Male, age 18, unknown 26.2
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 20.9
Pretectal area
nTPM: 22.3
2407 Male, age 75, both hemispheres 29.1
2825 Male, age 18, unknown 25.4
2667 Female, age 75, unknown 25.1
1815 Male, age 53, unknown 24.4
2316 Male, age 76, right hemisphere 23.4
2224 Female, age 72, unknown 21.8
2273 Male, age 74, both hemispheres 20.7
2007 Male, age 72, unknown 19.6
1816 Male, age 51, unknown 19.1
1817 Female, age 42, unknown 18.4
1944 Female, age 72, unknown 18.3
Red nucleus
nTPM: 26.1
2588 Male, age 74, left hemisphere 32.2
2823 Male, age 76, right hemisphere 31.4
2503 Female, age 72, unknown 28.4
2584 Male, age 75, left hemisphere 28.2
1904 Male, age 53, unknown 26.8
1865 Male, age 51, unknown 26.3
2227 Male, age 72, unknown 25.9
2725 Female, age 75, unknown 24.6
2769 Male, age 72, unknown 23.7
2785 Male, age 18, unknown 22.4
1954 Female, age 42, unknown 21.7
1821 Female, age 72, unknown 21.6
Substantia nigra
nTPM: 23.4
2409 Female, age 72, unknown 29.2
2583 Male, age 75, right hemisphere 27.2
2241 Male, age 72, unknown 27.0
2590 Female, age 75, unknown 24.1
1851 Male, age 51, unknown 23.7
2699 Male, age 18, unknown 23.5
2665 Male, age 74, both hemispheres 22.6
1889 Female, age 72, unknown 21.1
1941 Male, age 53, unknown 18.9
1916 Female, age 42, unknown 16.6
Superior colliculus
nTPM: 24.8
1895 Male, age 76, right hemisphere 29.9
2664 Male, age 75, both hemispheres 27.2
1839 Male, age 51, unknown 26.9
1995 Male, age 72, unknown 25.8
1796 Male, age 53, unknown 24.9
2261 Male, age 18, unknown 24.1
1913 Female, age 42, unknown 23.3
2668 Female, age 75, unknown 23.3
2587 Male, age 74, left hemisphere 22.4
2087 Female, age 72, unknown 20.3
Ventral tegmental area
nTPM: 21.4
2410 Female, age 72, unknown 22.9
2223 Female, age 72, unknown 21.9
1942 Male, age 51, unknown 21.8
2021 Male, age 53, unknown 20.9
2218 Male, age 76, both hemispheres 20.6
1915 Female, age 42, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 9.7
Min nTPM: 1.0
Std nTPM: 1.4
Median nTPM: 3.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 9.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 8.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 6.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 6.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 6.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 5.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 5.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

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