MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA Brain:67.6 nTPM
GTEx:30.1 nTPM
FANTOM5:154.8 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:31.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.4
2019 Male, age 18, unknown 71.1
1870 Female, age 42, unknown 66.0
1830 Male, age 51, unknown 61.4
2828 Female, age 72, unknown 60.5
1833 Male, age 53, unknown 59.1
2666 Male, age 74, left hemisphere 55.8
2411 Female, age 72, unknown 54.0
2586 Male, age 75, left hemisphere 50.7
1827 Male, age 72, unknown 45.4
2219 Male, age 76, both hemispheres 40.0
Dorsal raphe nucleus
nTPM: 51.9
2750 Male, age 76, both hemispheres 59.8
2016 Female, age 72, unknown 58.2
1828 Male, age 53, unknown 53.1
2298 Female, age 72, unknown 46.6
2047 Male, age 72, unknown 41.8
Inferior colliculus
nTPM: 49.6
1890 Male, age 53, unknown 52.2
1848 Female, age 42, unknown 51.7
2097 Female, age 72, unknown 49.0
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 40.7
2220 Male, age 76, midline 40.7
Periaquaductal grey, anterior
nTPM: 46.5
2502 Female, age 75, unknown 52.8
1795 Male, age 51, unknown 44.1
1947 Male, age 18, unknown 42.6
Periaquaductal grey, dorsal
nTPM: 46.2
1831 Male, age 72, unknown 51.3
2464 Female, age 72, unknown 47.3
2850 Male, age 76, both hemispheres 44.8
1840 Male, age 53, unknown 41.3
Periaquaductal grey, lateral
nTPM: 47.4
2053 Male, age 18, unknown 50.9
2272 Male, age 74, both hemispheres 46.6
2140 Male, age 76, both hemispheres 44.6
Pretectal area
nTPM: 49.3
1817 Female, age 42, unknown 56.4
1815 Male, age 53, unknown 55.2
2316 Male, age 76, right hemisphere 53.9
2273 Male, age 74, both hemispheres 52.6
2667 Female, age 75, unknown 52.1
2407 Male, age 75, both hemispheres 50.3
2007 Male, age 72, unknown 47.4
2224 Female, age 72, unknown 47.1
2825 Male, age 18, unknown 44.8
1944 Female, age 72, unknown 43.3
1816 Male, age 51, unknown 39.7
Red nucleus
nTPM: 67.6
1865 Male, age 51, unknown 76.7
2769 Male, age 72, unknown 74.7
1904 Male, age 53, unknown 73.9
1821 Female, age 72, unknown 73.8
2785 Male, age 18, unknown 72.2
2227 Male, age 72, unknown 71.6
2823 Male, age 76, right hemisphere 70.3
1954 Female, age 42, unknown 68.6
2503 Female, age 72, unknown 68.5
2588 Male, age 74, left hemisphere 54.5
2725 Female, age 75, unknown 54.4
2584 Male, age 75, left hemisphere 52.2
Substantia nigra
nTPM: 51.2
2590 Female, age 75, unknown 56.6
2699 Male, age 18, unknown 56.3
2409 Female, age 72, unknown 54.3
1851 Male, age 51, unknown 54.2
2583 Male, age 75, right hemisphere 51.5
2665 Male, age 74, both hemispheres 51.5
1889 Female, age 72, unknown 51.1
2241 Male, age 72, unknown 46.8
1941 Male, age 53, unknown 45.1
1916 Female, age 42, unknown 45.0
Superior colliculus
nTPM: 54.0
1995 Male, age 72, unknown 74.1
1913 Female, age 42, unknown 72.7
2587 Male, age 74, left hemisphere 60.6
1839 Male, age 51, unknown 55.5
2664 Male, age 75, both hemispheres 50.5
2668 Female, age 75, unknown 48.7
1895 Male, age 76, right hemisphere 48.4
1796 Male, age 53, unknown 45.5
2087 Female, age 72, unknown 45.2
2261 Male, age 18, unknown 38.5
Ventral tegmental area
nTPM: 52.4
2223 Female, age 72, unknown 62.1
2410 Female, age 72, unknown 55.0
2021 Male, age 53, unknown 53.5
1942 Male, age 51, unknown 48.1
1915 Female, age 42, unknown 48.0
2218 Male, age 76, both hemispheres 47.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.1
Samples: 139

Max nTPM: 54.7
Min nTPM: 13.1
Std nTPM: 8.5
Median nTPM: 28.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 54.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 53.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 45.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 43.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 43.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 43.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.8
FF:10158-103A5 76 years, female 154.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.9
Samples: 4

Max nTPM: 40.0
Min nTPM: 28.9
Sample A Female 39.9
Sample B Female 38.7
Sample C Male 28.9
Sample D Male 40.0
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 66.7
Min nTPM: 17.7
Sample A Female 66.7
Sample B Female 34.5
Sample C Male 20.0
Sample D Male 17.7
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 33.2
Min nTPM: 28.1
Sample B Female 32.6
Sample C Male 33.2
Sample D Male 28.1
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 25.0
Sample A Female 39.0
Sample B Female 26.9
Sample C Male 25.0
Sample D Male 28.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 34.6
Min nTPM: 29.9
Sample A Male 34.6
Sample B Male 29.9
Sample C Female 31.1
Sample D Female 30.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74988549 Antisense, RP_060315_05_E10, Mouse strain C57BL/6J (56 days, male) 0.4
70473897 Antisense, RP_050614_04_E05, Mouse strain C57BL/6J (56 days, male) 0.3
71210001 Antisense, RP_050810_03_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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