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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.1
nTPM
Monaco:
100.1
nTPM
Schmiedel:
9.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
23.1
HPA sample
nTPM
gdT-cell nTPM: 23.1
Samples: 6
Max nTPM: 28.5
Min nTPM: 14.3
P10809_1007
25.0
P10809_1022
25.5
P10809_1041
28.5
P10809_1060
17.5
P10809_1077
27.7
P10809_1098
14.3
MAIT T-cell nTPM: 17.6
Samples: 6
Max nTPM: 24.5
Min nTPM: 12.8
P10809_1006
13.9
P10809_1024
24.5
P10809_1043
24.4
P10809_1062
12.9
P10809_1083
12.8
P10809_1097
17.0
Memory CD4 T-cell nTPM: 11.7
Samples: 6
Max nTPM: 16.6
Min nTPM: 6.8
P10809_1014
6.8
P10809_1026
14.5
P10809_1045
10.9
P10809_1064
12.9
P10809_1086
16.6
P10809_1113
8.5
Memory CD8 T-cell nTPM: 17.5
Samples: 5
Max nTPM: 22.3
Min nTPM: 11.9
P10809_1012
14.6
P10809_1027
22.3
P10809_1046
20.2
P10809_1065
18.5
P10809_1111
11.9
Naive CD4 T-cell nTPM: 2.0
Samples: 6
Max nTPM: 8.3
Min nTPM: 0.2
P10809_1015
1.0
P10809_1030
1.1
P10809_1049
1.1
P10809_1068
0.2
P10809_1085
8.3
P10809_1112
0.4
Naive CD8 T-cell nTPM: 12.6
Samples: 6
Max nTPM: 23.6
Min nTPM: 3.1
P10809_1016
3.1
P10809_1031
15.2
P10809_1050
10.0
P10809_1069
18.4
P10809_1087
23.6
P10809_1110
5.4
T-reg nTPM: 14.5
Samples: 6
Max nTPM: 22.8
Min nTPM: 6.2
P10809_1018
9.5
P10809_1037
22.8
P10809_1056
9.7
P10809_1075
20.7
P10809_1094
6.2
P10809_1106
18.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
100.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 19.2
Samples: 4
Max nTPM: 22.8
Min nTPM: 17.7
RHH5202_R3573
17.7
RHH5230_R3602
22.8
RHH5259_R3631
18.4
RHH5288_R3660
17.8
Effector memory CD8 T-cell nTPM: 59.5
Samples: 4
Max nTPM: 91.0
Min nTPM: 39.4
RHH5203_R3574
62.9
RHH5231_R3603
44.8
RHH5260_R3632
39.4
RHH5289_R3661
91.0
MAIT T-cell nTPM: 46.1
Samples: 4
Max nTPM: 63.8
Min nTPM: 25.9
RHH5233_R3605
63.8
RHH5205_R3576
54.1
RHH5262_R3634
25.9
RHH5297_R3663
40.4
Memory CD4 T-cell TFH nTPM: 17.1
Samples: 4
Max nTPM: 31.6
Min nTPM: 9.0
RHH5300_R3666
12.6
RHH5236_R3608
31.6
RHH5265_R3637
9.0
RHH5208_R3579
15.3
Memory CD4 T-cell Th1 nTPM: 18.7
Samples: 4
Max nTPM: 21.9
Min nTPM: 14.4
RHH5210_R3581
14.4
RHH5302_R3668
20.5
RHH5238_R3610
18.0
RHH5267_R3639
21.9
Memory CD4 T-cell Th1/Th17 nTPM: 28.3
Samples: 4
Max nTPM: 34.8
Min nTPM: 17.4
RHH5303_R3669
34.8
RHH5211_R3582
28.9
RHH5239_R3611
31.9
RHH5268_R3640
17.4
Memory CD4 T-cell Th17 nTPM: 28.2
Samples: 4
Max nTPM: 38.0
Min nTPM: 22.4
RHH5304_R3670
28.7
RHH5212_R3583
22.4
RHH5240_R3612
38.0
RHH5269_R3641
23.7
Memory CD4 T-cell Th2 nTPM: 30.4
Samples: 4
Max nTPM: 54.0
Min nTPM: 16.2
RHH5305_R3671
16.2
RHH5213_R3584
20.1
RHH5241_R3613
54.0
RHH5270_R3642
31.2
Naive CD4 T-cell nTPM: 6.7
Samples: 4
Max nTPM: 17.4
Min nTPM: 1.9
RHH5306_R3672
4.5
RHH5214_R3585
2.8
RHH5242_R3614
17.4
RHH5271_R3643
1.9
Naive CD8 T-cell nTPM: 4.7
Samples: 4
Max nTPM: 12.1
Min nTPM: 1.7
RHH5201_R3572
2.9
RHH5229_R3601
12.1
RHH5258_R3630
2.2
RHH5287_R3659
1.7
Non-Vd2 gdTCR nTPM: 100.1
Samples: 4
Max nTPM: 150.4
Min nTPM: 66.9
RHH5235_R3607
66.9
RHH5264_R3636
78.1
RHH5207_R3578
150.4
RHH5299_R3665
105.1
T-reg nTPM: 20.7
Samples: 4
Max nTPM: 24.4
Min nTPM: 10.7
RHH5301_R3667
23.7
RHH5237_R3609
23.8
RHH5266_R3638
24.4
RHH5209_R3580
10.7
Terminal effector memory CD4 T-cell nTPM: 88.9
Samples: 2
Max nTPM: 109.1
Min nTPM: 68.7
RHH5243_R3615
109.1
RHH5272_R3644
68.7
Terminal effector memory CD8 T-cell nTPM: 88.9
Samples: 4
Max nTPM: 125.3
Min nTPM: 68.8
RHH5232_R3604
125.3
RHH5204_R3575
68.8
RHH5261_R3633
73.5
RHH5296_R3662
88.1
Vd2 gdTCR nTPM: 62.4
Samples: 4
Max nTPM: 103.6
Min nTPM: 31.6
RHH5234_R3606
67.8
RHH5206_R3577
103.6
RHH5263_R3635
46.4
RHH5298_R3664
31.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
