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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.1
nTPM
Monaco:
89.8
nTPM
Schmiedel:
71.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
21.1
HPA sample
nTPM
gdT-cell nTPM: 11.4
Samples: 6
Max nTPM: 23.8
Min nTPM: 3.6
P10809_1007
23.8
P10809_1022
7.8
P10809_1041
8.5
P10809_1060
3.6
P10809_1077
13.9
P10809_1098
11.0
MAIT T-cell nTPM: 13.5
Samples: 6
Max nTPM: 24.4
Min nTPM: 7.1
P10809_1006
20.3
P10809_1024
8.3
P10809_1043
13.1
P10809_1062
7.1
P10809_1083
8.0
P10809_1097
24.4
Memory CD4 T-cell nTPM: 19.1
Samples: 6
Max nTPM: 37.8
Min nTPM: 4.4
P10809_1014
37.8
P10809_1026
16.0
P10809_1045
29.7
P10809_1064
19.7
P10809_1086
6.7
P10809_1113
4.4
Memory CD8 T-cell nTPM: 21.1
Samples: 5
Max nTPM: 32.6
Min nTPM: 10.6
P10809_1012
29.4
P10809_1027
10.6
P10809_1046
32.6
P10809_1065
12.4
P10809_1111
20.4
Naive CD4 T-cell nTPM: 20.5
Samples: 6
Max nTPM: 50.7
Min nTPM: 6.0
P10809_1015
26.0
P10809_1030
17.3
P10809_1049
50.7
P10809_1068
8.6
P10809_1085
14.2
P10809_1112
6.0
Naive CD8 T-cell nTPM: 16.2
Samples: 6
Max nTPM: 20.8
Min nTPM: 7.0
P10809_1016
17.0
P10809_1031
20.8
P10809_1050
18.5
P10809_1069
17.1
P10809_1087
7.0
P10809_1110
16.6
T-reg nTPM: 20.5
Samples: 6
Max nTPM: 65.1
Min nTPM: 8.0
P10809_1018
9.3
P10809_1037
10.2
P10809_1056
65.1
P10809_1075
13.4
P10809_1094
8.0
P10809_1106
16.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
89.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 88.2
Samples: 4
Max nTPM: 159.5
Min nTPM: 43.5
RHH5202_R3573
43.5
RHH5230_R3602
159.5
RHH5259_R3631
103.4
RHH5288_R3660
46.2
Effector memory CD8 T-cell nTPM: 78.6
Samples: 4
Max nTPM: 121.7
Min nTPM: 27.9
RHH5203_R3574
61.5
RHH5231_R3603
121.7
RHH5260_R3632
103.2
RHH5289_R3661
27.9
MAIT T-cell nTPM: 70.0
Samples: 4
Max nTPM: 100.3
Min nTPM: 52.7
RHH5233_R3605
52.7
RHH5205_R3576
70.2
RHH5262_R3634
100.3
RHH5297_R3663
56.9
Memory CD4 T-cell TFH nTPM: 54.3
Samples: 4
Max nTPM: 78.3
Min nTPM: 17.3
RHH5300_R3666
70.9
RHH5236_R3608
78.3
RHH5265_R3637
50.6
RHH5208_R3579
17.3
Memory CD4 T-cell Th1 nTPM: 59.2
Samples: 4
Max nTPM: 97.5
Min nTPM: 38.0
RHH5210_R3581
40.8
RHH5302_R3668
38.0
RHH5238_R3610
60.3
RHH5267_R3639
97.5
Memory CD4 T-cell Th1/Th17 nTPM: 88.7
Samples: 4
Max nTPM: 133.2
Min nTPM: 49.8
RHH5303_R3669
49.8
RHH5211_R3582
92.8
RHH5239_R3611
78.9
RHH5268_R3640
133.2
Memory CD4 T-cell Th17 nTPM: 89.8
Samples: 4
Max nTPM: 141.1
Min nTPM: 41.1
RHH5304_R3670
49.5
RHH5212_R3583
141.1
RHH5240_R3612
41.1
RHH5269_R3641
127.5
Memory CD4 T-cell Th2 nTPM: 78.7
Samples: 4
Max nTPM: 121.3
Min nTPM: 55.3
RHH5305_R3671
60.5
RHH5213_R3584
77.7
RHH5241_R3613
55.3
RHH5270_R3642
121.3
Naive CD4 T-cell nTPM: 80.8
Samples: 4
Max nTPM: 129.8
Min nTPM: 41.7
RHH5306_R3672
74.1
RHH5214_R3585
129.8
RHH5242_R3614
41.7
RHH5271_R3643
77.6
Naive CD8 T-cell nTPM: 66.3
Samples: 4
Max nTPM: 82.3
Min nTPM: 25.7
RHH5201_R3572
25.7
RHH5229_R3601
82.3
RHH5258_R3630
79.0
RHH5287_R3659
78.2
Non-Vd2 gdTCR nTPM: 74.9
Samples: 4
Max nTPM: 115.2
Min nTPM: 52.5
RHH5235_R3607
115.2
RHH5264_R3636
56.5
RHH5207_R3578
52.5
RHH5299_R3665
75.2
T-reg nTPM: 74.5
Samples: 4
Max nTPM: 110.0
Min nTPM: 48.5
RHH5301_R3667
57.4
RHH5237_R3609
110.0
RHH5266_R3638
82.0
RHH5209_R3580
48.5
Terminal effector memory CD4 T-cell nTPM: 64.1
Samples: 2
Max nTPM: 88.4
Min nTPM: 39.8
RHH5243_R3615
88.4
RHH5272_R3644
39.8
Terminal effector memory CD8 T-cell nTPM: 80.4
Samples: 4
Max nTPM: 113.7
Min nTPM: 52.0
RHH5232_R3604
73.8
RHH5204_R3575
81.9
RHH5261_R3633
113.7
RHH5296_R3662
52.0
Vd2 gdTCR nTPM: 64.7
Samples: 4
Max nTPM: 80.8
Min nTPM: 53.4
RHH5234_R3606
53.4
RHH5206_R3577
57.2
RHH5263_R3635
80.8
RHH5298_R3664
67.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
