MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:30.1 nTPM
GTEx:1.8 nTPM
FANTOM5:30.7 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2219 Male, age 76, both hemispheres 30.3
1827 Male, age 72, unknown 29.8
2411 Female, age 72, unknown 29.4
1830 Male, age 51, unknown 29.1
2019 Male, age 18, unknown 28.6
2828 Female, age 72, unknown 27.9
1833 Male, age 53, unknown 27.3
2586 Male, age 75, left hemisphere 26.3
2666 Male, age 74, left hemisphere 26.2
1870 Female, age 42, unknown 25.1
Dorsal raphe nucleus
nTPM: 27.1
2047 Male, age 72, unknown 28.9
2016 Female, age 72, unknown 28.3
2750 Male, age 76, both hemispheres 28.2
2298 Female, age 72, unknown 25.8
1828 Male, age 53, unknown 24.2
Inferior colliculus
nTPM: 28.8
2849 Male, age 72, unknown 31.0
1890 Male, age 53, unknown 29.1
1848 Female, age 42, unknown 28.2
2097 Female, age 72, unknown 27.0
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Periaquaductal grey, anterior
nTPM: 27.6
1947 Male, age 18, unknown 28.9
2502 Female, age 75, unknown 27.4
1795 Male, age 51, unknown 26.4
Periaquaductal grey, dorsal
nTPM: 28.9
1840 Male, age 53, unknown 29.4
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 28.9
2850 Male, age 76, both hemispheres 28.4
Periaquaductal grey, lateral
nTPM: 30.1
2272 Male, age 74, both hemispheres 31.0
2140 Male, age 76, both hemispheres 30.6
2053 Male, age 18, unknown 28.6
Pretectal area
nTPM: 28.4
2273 Male, age 74, both hemispheres 31.2
2407 Male, age 75, both hemispheres 31.2
2316 Male, age 76, right hemisphere 30.1
2667 Female, age 75, unknown 29.6
2224 Female, age 72, unknown 28.9
1816 Male, age 51, unknown 28.7
2825 Male, age 18, unknown 28.3
1944 Female, age 72, unknown 28.0
2007 Male, age 72, unknown 26.2
1815 Male, age 53, unknown 25.8
1817 Female, age 42, unknown 24.5
Red nucleus
nTPM: 27.7
2823 Male, age 76, right hemisphere 30.8
2584 Male, age 75, left hemisphere 29.5
1865 Male, age 51, unknown 29.2
1904 Male, age 53, unknown 28.8
2588 Male, age 74, left hemisphere 28.7
2503 Female, age 72, unknown 28.6
1954 Female, age 42, unknown 28.1
2227 Male, age 72, unknown 27.2
2785 Male, age 18, unknown 26.6
2769 Male, age 72, unknown 25.9
2725 Female, age 75, unknown 25.0
1821 Female, age 72, unknown 23.5
Substantia nigra
nTPM: 26.4
2590 Female, age 75, unknown 30.0
2583 Male, age 75, right hemisphere 28.3
1941 Male, age 53, unknown 27.7
2241 Male, age 72, unknown 26.3
1889 Female, age 72, unknown 26.1
1916 Female, age 42, unknown 26.1
2699 Male, age 18, unknown 25.9
1851 Male, age 51, unknown 24.7
2665 Male, age 74, both hemispheres 24.7
2409 Female, age 72, unknown 24.0
Superior colliculus
nTPM: 28.3
1895 Male, age 76, right hemisphere 31.1
2087 Female, age 72, unknown 30.8
2664 Male, age 75, both hemispheres 30.0
1796 Male, age 53, unknown 29.3
2261 Male, age 18, unknown 29.1
1839 Male, age 51, unknown 26.9
1913 Female, age 42, unknown 26.9
1995 Male, age 72, unknown 26.9
2668 Female, age 75, unknown 26.3
2587 Male, age 74, left hemisphere 25.7
Ventral tegmental area
nTPM: 27.2
2021 Male, age 53, unknown 29.0
2218 Male, age 76, both hemispheres 28.7
1942 Male, age 51, unknown 28.3
2410 Female, age 72, unknown 26.9
2223 Female, age 72, unknown 26.2
1915 Female, age 42, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 3.9
Min nTPM: 0.7
Std nTPM: 0.6
Median nTPM: 1.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 3.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 3.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 3.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 3.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 3.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 3.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 2.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

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