MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA Brain:79.0 nTPM
GTEx:67.1 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:98.2 nTPM
Mouse:112.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.1
2666 Male, age 74, left hemisphere 93.8
2586 Male, age 75, left hemisphere 92.3
1870 Female, age 42, unknown 82.6
2411 Female, age 72, unknown 73.5
1827 Male, age 72, unknown 73.4
1830 Male, age 51, unknown 69.9
1833 Male, age 53, unknown 67.9
2019 Male, age 18, unknown 67.2
2828 Female, age 72, unknown 65.3
2219 Male, age 76, both hemispheres 45.4
Dorsal raphe nucleus
nTPM: 69.7
2016 Female, age 72, unknown 79.0
2047 Male, age 72, unknown 70.7
2750 Male, age 76, both hemispheres 70.1
2298 Female, age 72, unknown 66.4
1828 Male, age 53, unknown 62.2
Inferior colliculus
nTPM: 59.1
1890 Male, age 53, unknown 64.3
2097 Female, age 72, unknown 62.3
1848 Female, age 42, unknown 60.3
2849 Male, age 72, unknown 49.7
Median raphe nucleus
nTPM: 59.6
2220 Male, age 76, midline 59.6
Periaquaductal grey, anterior
nTPM: 74.3
1947 Male, age 18, unknown 81.7
2502 Female, age 75, unknown 72.9
1795 Male, age 51, unknown 68.3
Periaquaductal grey, dorsal
nTPM: 67.1
1831 Male, age 72, unknown 73.0
1840 Male, age 53, unknown 71.2
2464 Female, age 72, unknown 65.4
2850 Male, age 76, both hemispheres 58.7
Periaquaductal grey, lateral
nTPM: 59.7
2053 Male, age 18, unknown 74.4
2140 Male, age 76, both hemispheres 54.1
2272 Male, age 74, both hemispheres 50.5
Pretectal area
nTPM: 67.6
1815 Male, age 53, unknown 81.1
1816 Male, age 51, unknown 77.2
2007 Male, age 72, unknown 73.2
2407 Male, age 75, both hemispheres 72.0
1944 Female, age 72, unknown 71.1
1817 Female, age 42, unknown 69.8
2825 Male, age 18, unknown 65.5
2224 Female, age 72, unknown 63.3
2273 Male, age 74, both hemispheres 58.1
2667 Female, age 75, unknown 56.9
2316 Male, age 76, right hemisphere 54.7
Red nucleus
nTPM: 77.0
2503 Female, age 72, unknown 95.6
2588 Male, age 74, left hemisphere 90.7
1821 Female, age 72, unknown 85.4
2584 Male, age 75, left hemisphere 82.3
1904 Male, age 53, unknown 79.4
1865 Male, age 51, unknown 78.2
1954 Female, age 42, unknown 76.5
2725 Female, age 75, unknown 71.7
2227 Male, age 72, unknown 68.7
2785 Male, age 18, unknown 67.6
2769 Male, age 72, unknown 65.9
2823 Male, age 76, right hemisphere 61.5
Substantia nigra
nTPM: 79.0
2583 Male, age 75, right hemisphere 95.6
2241 Male, age 72, unknown 91.5
2665 Male, age 74, both hemispheres 89.8
1851 Male, age 51, unknown 80.8
1889 Female, age 72, unknown 77.1
2590 Female, age 75, unknown 74.9
2409 Female, age 72, unknown 73.9
1916 Female, age 42, unknown 70.4
1941 Male, age 53, unknown 68.8
2699 Male, age 18, unknown 67.4
Superior colliculus
nTPM: 74.2
2668 Female, age 75, unknown 97.6
2664 Male, age 75, both hemispheres 83.6
1913 Female, age 42, unknown 78.6
2587 Male, age 74, left hemisphere 78.6
1995 Male, age 72, unknown 77.1
2261 Male, age 18, unknown 75.4
2087 Female, age 72, unknown 69.8
1796 Male, age 53, unknown 67.4
1839 Male, age 51, unknown 65.9
1895 Male, age 76, right hemisphere 48.5
Ventral tegmental area
nTPM: 72.3
2223 Female, age 72, unknown 95.9
1942 Male, age 51, unknown 72.7
2021 Male, age 53, unknown 71.5
2410 Female, age 72, unknown 70.6
1915 Female, age 42, unknown 67.7
2218 Male, age 76, both hemispheres 55.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.1
Samples: 139

Max nTPM: 153.4
Min nTPM: 30.2
Std nTPM: 28.3
Median nTPM: 60.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 153.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 150.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 146.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 139.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 134.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 134.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 133.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 124.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 122.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.9
FF:10158-103A5 76 years, female 78.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.1
Samples: 4

Max nTPM: 110.1
Min nTPM: 75.7
Sample A Female 110.1
Sample B Female 75.7
Sample C Male 85.2
Sample D Male 85.4
Midbrain
nTPM: 98.2
Samples: 4

Max nTPM: 128.6
Min nTPM: 74.6
Sample A Female 128.6
Sample B Female 108.8
Sample C Male 80.7
Sample D Male 74.6
Periaqueductal gray
nTPM: 74.8
Samples: 3

Max nTPM: 75.5
Min nTPM: 73.7
Sample B Female 75.5
Sample C Male 75.2
Sample D Male 73.7
Superior colliculi
nTPM: 77.0
Samples: 4

Max nTPM: 90.7
Min nTPM: 56.5
Sample A Female 90.7
Sample B Female 56.5
Sample C Male 79.4
Sample D Male 81.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.6
Samples: 4

Max nTPM: 114.0
Min nTPM: 109.4
Sample A Male 109.4
Sample B Male 114.0
Sample C Female 114.0
Sample D Female 113.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
1726 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 5.8
1727 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 5.3

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