MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA Brain:54.4 nTPM
GTEx:17.8 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:24.9 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.9
2586 Male, age 75, left hemisphere 69.4
2666 Male, age 74, left hemisphere 60.1
1827 Male, age 72, unknown 53.1
2828 Female, age 72, unknown 51.5
2411 Female, age 72, unknown 39.8
1833 Male, age 53, unknown 38.6
1870 Female, age 42, unknown 38.5
2219 Male, age 76, both hemispheres 38.4
1830 Male, age 51, unknown 36.0
2019 Male, age 18, unknown 33.2
Dorsal raphe nucleus
nTPM: 44.2
2750 Male, age 76, both hemispheres 49.9
2047 Male, age 72, unknown 49.4
2298 Female, age 72, unknown 47.9
1828 Male, age 53, unknown 37.6
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 31.6
2097 Female, age 72, unknown 35.4
1890 Male, age 53, unknown 32.4
2849 Male, age 72, unknown 30.0
1848 Female, age 42, unknown 28.6
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Periaquaductal grey, anterior
nTPM: 53.1
1795 Male, age 51, unknown 57.6
1947 Male, age 18, unknown 55.2
2502 Female, age 75, unknown 46.6
Periaquaductal grey, dorsal
nTPM: 38.2
1840 Male, age 53, unknown 41.4
1831 Male, age 72, unknown 38.7
2850 Male, age 76, both hemispheres 36.5
2464 Female, age 72, unknown 36.0
Periaquaductal grey, lateral
nTPM: 38.1
2140 Male, age 76, both hemispheres 42.9
2053 Male, age 18, unknown 40.1
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 42.9
1816 Male, age 51, unknown 54.4
2007 Male, age 72, unknown 47.4
1944 Female, age 72, unknown 46.4
2825 Male, age 18, unknown 45.8
2407 Male, age 75, both hemispheres 44.7
2667 Female, age 75, unknown 44.6
1815 Male, age 53, unknown 43.2
2224 Female, age 72, unknown 40.9
1817 Female, age 42, unknown 39.2
2316 Male, age 76, right hemisphere 35.3
2273 Male, age 74, both hemispheres 30.2
Red nucleus
nTPM: 35.7
2584 Male, age 75, left hemisphere 53.6
2588 Male, age 74, left hemisphere 43.0
2725 Female, age 75, unknown 37.7
1821 Female, age 72, unknown 33.7
2227 Male, age 72, unknown 33.5
2769 Male, age 72, unknown 33.4
1904 Male, age 53, unknown 33.2
1954 Female, age 42, unknown 33.0
2823 Male, age 76, right hemisphere 33.0
2785 Male, age 18, unknown 32.6
2503 Female, age 72, unknown 32.5
1865 Male, age 51, unknown 28.8
Substantia nigra
nTPM: 54.4
1916 Female, age 42, unknown 79.7
1851 Male, age 51, unknown 63.3
2665 Male, age 74, both hemispheres 60.4
2241 Male, age 72, unknown 56.2
2583 Male, age 75, right hemisphere 54.3
1941 Male, age 53, unknown 54.0
2699 Male, age 18, unknown 47.1
2590 Female, age 75, unknown 44.2
2409 Female, age 72, unknown 43.4
1889 Female, age 72, unknown 41.8
Superior colliculus
nTPM: 42.6
2664 Male, age 75, both hemispheres 59.4
2261 Male, age 18, unknown 56.8
1796 Male, age 53, unknown 50.6
2668 Female, age 75, unknown 50.4
2087 Female, age 72, unknown 48.2
1839 Male, age 51, unknown 35.7
2587 Male, age 74, left hemisphere 33.8
1913 Female, age 42, unknown 31.8
1895 Male, age 76, right hemisphere 29.9
1995 Male, age 72, unknown 29.9
Ventral tegmental area
nTPM: 49.7
1915 Female, age 42, unknown 59.6
1942 Male, age 51, unknown 52.1
2021 Male, age 53, unknown 50.1
2410 Female, age 72, unknown 48.9
2218 Male, age 76, both hemispheres 46.9
2223 Female, age 72, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 139

Max nTPM: 38.3
Min nTPM: 8.2
Std nTPM: 5.1
Median nTPM: 17.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 31.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 29.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 28.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 27.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 27.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 27.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 27.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 10.9
Sample A Female 21.4
Sample B Female 15.1
Sample C Male 23.7
Sample D Male 10.9
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 15.3
Sample C Male 18.5
Sample D Male 17.8
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 20.2
Min nTPM: 13.8
Sample B Female 15.6
Sample C Male 20.2
Sample D Male 13.8
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 16.9
Min nTPM: 11.2
Sample A Female 16.9
Sample B Female 11.2
Sample C Male 14.0
Sample D Male 15.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 25.5
Min nTPM: 23.5
Sample A Male 25.3
Sample B Male 23.5
Sample C Female 25.5
Sample D Female 25.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
73811597 Antisense, RP_051212_03_E05, Mouse strain C57BL/6J (56 days, male) 1.4
631716 Antisense, RP_040907_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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