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KIAA1671
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                                  • KIAA1671
                                  BRAIN PONS AND MEDULLA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  Brain proteome
                                  PONS AND MEDULLA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:32.3 nTPM
                                  FANTOM5:37.3 Scaled Tags Per Million
                                  Pig:27.2 nTPM
                                  Mouse:3.0 nTPM
                                  Allen mouse:0.5 Expression energy

                                  PONS AND MEDULLA - HPA Brain RNA-seq
                                  Max nTPM 32.3
                                  Sample id Sample description nTPM
                                  Anterior cochlear nucleus, ventral
                                  nTPM: 16.8
                                  1984 Male, age 76, both hemispheres 19.5
                                  2301 Female, age 85, both hemispheres 17.3
                                  2090 Male, age 80, both hemispheres 15.8
                                  2188 Female, age 91, both hemispheres 14.5
                                  Area postrema
                                  nTPM: 30.7
                                  2799 Male, age 61, both hemispheres 44.0
                                  2054 Male, age 76, both hemispheres 25.3
                                  2306 Male, age 80, both hemispheres 22.8
                                  Dorsal cochlear nucleus
                                  nTPM: 21.4
                                  2802 Male, age 74, right hemisphere 25.2
                                  2370 Male, age 61, both hemispheres 21.7
                                  2058 Male, age 76, both hemispheres 21.0
                                  2378 Male, age 80, both hemispheres 20.2
                                  2187 Female, age 91, both hemispheres 18.6
                                  Dorsal medullary reticular nucleus
                                  nTPM: 19.3
                                  2373 Male, age 61, both hemispheres 21.6
                                  2088 Male, age 76, both hemispheres 18.6
                                  2040 Female, age 85, both hemispheres 17.8
                                  Dorsal motor vagal complex
                                  nTPM: 28.2
                                  2797 Male, age 61, both hemispheres 37.5
                                  2643 Male, age 74, both hemispheres 36.5
                                  2844 Male, age 55, unknown 29.9
                                  2813 Female, age 72, unknown 28.3
                                  2185 Male, age 76, both hemispheres 24.4
                                  2133 Female, age 91, both hemispheres 24.1
                                  2000 Male, age 74, unknown 23.4
                                  2807 Female, age 85, both hemispheres 21.4
                                  Dorsal tegmental nucleus
                                  nTPM: 22.7
                                  1936 Male, age 76, left hemisphere 25.7
                                  2326 Male, age 74, both hemispheres 23.6
                                  2358 Male, age 61, both hemispheres 22.6
                                  2083 Male, age 80, both hemispheres 18.9
                                  Dorsolateral tegmental area
                                  nTPM: 23.3
                                  2360 Male, age 74, both hemispheres 35.0
                                  2141 Male, age 76, both hemispheres 28.4
                                  2654 Male, age 80, both hemispheres 19.0
                                  2751 Female, age 85, both hemispheres 18.8
                                  2337 Male, age 61, both hemispheres 15.3
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 20.9
                                  2314 Male, age 61, both hemispheres 23.6
                                  2462 Male, age 74, both hemispheres 22.6
                                  2022 Male, age 76, right hemisphere 21.7
                                  2387 Female, age 91, both hemispheres 21.5
                                  1876 Female, age 85, both hemispheres 19.7
                                  2310 Male, age 80, both hemispheres 16.5
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 20.1
                                  2168 Male, age 76, both hemispheres 20.8
                                  2084 Female, age 85, both hemispheres 20.5
                                  2706 Male, age 80, both hemispheres 20.5
                                  2330 Male, age 80, both hemispheres 20.3
                                  2336 Male, age 61, both hemispheres 18.6
                                  Inferior olive
                                  nTPM: 32.3
                                  2085 Female, age 85, both hemispheres 36.3
                                  2563 Male, age 74, both hemispheres 36.2
                                  2379 Male, age 80, both hemispheres 31.0
                                  2178 Male, age 61, both hemispheres 29.1
                                  2628 Female, age 91, both hemispheres 29.0
                                  Kolliker-Fuse nucleus
                                  nTPM: 22.6
                                  2315 Male, age 76, right hemisphere 31.5
                                  2163 Male, age 80, both hemispheres 21.1
                                  2793 Female, age 91, left hemisphere 15.2
                                  Lateral lemniscal nuclei
                                  nTPM: 18.1
                                  2169 Male, age 76, both hemispheres 20.0
                                  2453 Male, age 74, right hemisphere 19.3
                                  2036 Male, age 80, both hemispheres 18.6
                                  2746 Female, age 85, left hemisphere 16.7
                                  2320 Female, age 91, left hemisphere 15.7
                                  Lateral medullary reticular nucleus
                                  nTPM: 23.3
                                  2804 Female, age 91, both hemispheres 31.2
                                  2374 Male, age 61, both hemispheres 27.3
                                  2190 Female, age 85, both hemispheres 25.2
                                  2305 Male, age 74, both hemispheres 19.2
                                  2852 Male, age 80, both hemispheres 18.6
                                  2044 Male, age 76, both hemispheres 18.1
                                  Lateral parabrachial nucleus
                                  nTPM: 21.2
                                  2139 Female, age 85, right hemisphere 24.5
                                  2790 Male, age 61, both hemispheres 21.1
                                  2792 Male, age 76, both hemispheres 20.3
                                  2013 Male, age 80, both hemispheres 19.0
                                  Lateral vestibular nucleus
                                  nTPM: 22.7
                                  2184 Male, age 76, both hemispheres 24.6
                                  2311 Male, age 80, both hemispheres 20.7
                                  Locus coeruleus
                                  nTPM: 24.1
                                  2123 Female, age 91, both hemispheres 27.0
                                  2317 Female, age 72, unknown 25.1
                                  1980 Male, age 76, both hemispheres 24.6
                                  2014 Male, age 55, unknown 24.6
                                  2788 Male, age 74, unknown 24.6
                                  2720 Male, age 74, both hemispheres 21.7
                                  2162 Male, age 80, both hemispheres 21.3
                                  Medial olivary nucleus
                                  nTPM: 23.5
                                  2138 Female, age 91, both hemispheres 32.0
                                  1943 Male, age 61, both hemispheres 21.2
                                  1962 Male, age 76, both hemispheres 20.4
                                  2851 Male, age 80, both hemispheres 20.3
                                  Medial parabrachial nucleus
                                  nTPM: 18.7
                                  2786 Male, age 76, both hemispheres 21.5
                                  2156 Male, age 61, both hemispheres 20.1
                                  2463 Female, age 85, right hemisphere 17.5
                                  2854 Male, age 80, both hemispheres 17.5
                                  2170 Female, age 91, both hemispheres 16.9
                                  Medial periolivary nuclei
                                  nTPM: 19.0
                                  2791 Male, age 74, right hemisphere 21.5
                                  2063 Male, age 76, both hemispheres 21.0
                                  2171 Female, age 85, both hemispheres 20.4
                                  2458 Female, age 91, both hemispheres 16.7
                                  2081 Male, age 80, both hemispheres 15.5
                                  Medial vestibular nucleus
                                  nTPM: 22.5
                                  2743 Female, age 85, both hemispheres 27.5
                                  2134 Male, age 76, both hemispheres 24.4
                                  2624 Male, age 61, both hemispheres 23.0
                                  2801 Male, age 74, both hemispheres 21.3
                                  2803 Female, age 91, both hemispheres 19.6
                                  2093 Male, age 80, both hemispheres 19.5
                                  Motor facial nucleus
                                  nTPM: 20.2
                                  2795 Female, age 91, both hemispheres 29.2
                                  2062 Male, age 76, both hemispheres 22.1
                                  2327 Male, age 80, both hemispheres 18.9
                                  2126 Male, age 61, both hemispheres 18.3
                                  2365 Male, age 74, right hemisphere 17.9
                                  2697 Female, age 85, both hemispheres 15.1
                                  Motor hypoglossal nucleus
                                  nTPM: 20.1
                                  2461 Male, age 61, both hemispheres 26.0
                                  2277 Male, age 76, both hemispheres 22.3
                                  2125 Female, age 91, both hemispheres 21.1
                                  2182 Male, age 80, both hemispheres 16.6
                                  2132 Female, age 85, both hemispheres 14.5
                                  Motor trigeminal nucleus
                                  nTPM: 17.8
                                  2309 Male, age 76, both hemispheres 20.5
                                  2079 Male, age 80, both hemispheres 18.8
                                  2335 Male, age 61, both hemispheres 17.6
                                  2560 Male, age 74, both hemispheres 16.5
                                  2321 Female, age 91, both hemispheres 15.6
                                  Nuclei of the trapezoid body
                                  nTPM: 20.2
                                  2368 Female, age 91, both hemispheres 23.2
                                  1983 Male, age 76, both hemispheres 21.8
                                  2735 Female, age 85, both hemispheres 21.1
                                  2159 Male, age 61, both hemispheres 18.8
                                  2166 Male, age 80, both hemispheres 16.4
                                  Nucleus ambiguus
                                  nTPM: 21.2
                                  2071 Male, age 76, both hemispheres 24.4
                                  2096 Female, age 85, both hemispheres 18.0
                                  Nucleus cuneatus
                                  nTPM: 23.7
                                  2564 Male, age 74, both hemispheres 31.7
                                  2805 Female, age 91, both hemispheres 28.2
                                  2562 Male, age 61, both hemispheres 26.2
                                  2100 Male, age 76, both hemispheres 25.7
                                  2131 Male, age 76, both hemispheres 23.7
                                  2376 Male, age 61, both hemispheres 20.9
                                  2808 Female, age 85, both hemispheres 20.4
                                  2381 Male, age 80, both hemispheres 18.4
                                  2380 Male, age 80, both hemispheres 18.0
                                  Nucleus gracilis
                                  nTPM: 23.6
                                  2627 Male, age 74, both hemispheres 28.2
                                  2299 Female, age 85, both hemispheres 27.5
                                  2382 Male, age 80, both hemispheres 15.1
                                  Nucleus raphe magnus
                                  nTPM: 19.6
                                  2160 Male, age 61, both hemispheres 22.1
                                  2051 Male, age 76, both hemispheres 20.3
                                  2455 Male, age 74, both hemispheres 20.2
                                  2172 Female, age 85, both hemispheres 19.3
                                  2328 Male, age 80, both hemispheres 18.0
                                  2459 Female, age 91, both hemispheres 17.5
                                  Nucleus raphe obscurus
                                  nTPM: 22.3
                                  2800 Male, age 61, midline 23.0
                                  2845 Female, age 85, midline 22.2
                                  2142 Male, age 76, midline 21.8
                                  Nucleus raphe pallidus
                                  nTPM: 19.5
                                  1924 Male, age 61, midline 22.2
                                  2145 Male, age 76, midline 19.4
                                  2183 Male, age 80, midline 17.0
                                  Nucleus tractus solitarii
                                  nTPM: 30.3
                                  2144 Female, age 91, right hemisphere 37.8
                                  2191 Female, age 85, both hemispheres 37.5
                                  2307 Male, age 80, both hemispheres 26.0
                                  2656 Male, age 76, both hemispheres 19.8
                                  Paramedian reticular nucleus
                                  nTPM: 17.0
                                  2057 Male, age 80, both hemispheres 17.4
                                  2050 Female, age 85, both hemispheres 16.9
                                  2052 Male, age 76, both hemispheres 16.9
                                  2313 Male, age 61, both hemispheres 16.5
                                  Parvicellular reticular nuclei
                                  nTPM: 18.5
                                  2095 Male, age 76, both hemispheres 18.9
                                  2558 Male, age 74, both hemispheres 18.6
                                  2119 Male, age 80, both hemispheres 17.9
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 21.9
                                  2091 Female, age 85, both hemispheres 23.0
                                  2181 Male, age 80, left hemisphere 22.0
                                  2189 Female, age 91, both hemispheres 20.8
                                  Pedunculopontine tegmental nucleus
                                  nTPM: 20.9
                                  1921 Female, age 85, both hemispheres 24.2
                                  2334 Male, age 80, both hemispheres 19.5
                                  2338 Male, age 61, both hemispheres 19.1
                                  Peritrigeminal nucleus
                                  nTPM: 21.8
                                  2067 Female, age 85, both hemispheres 23.9
                                  2179 Male, age 61, both hemispheres 21.0
                                  2136 Male, age 76, both hemispheres 20.6
                                  Pontine nuclei
                                  nTPM: 16.9
                                  1863 Male, age 55, unknown 20.7
                                  1968 Male, age 76, left hemisphere 19.7
                                  2727 Male, age 61, right hemisphere 19.7
                                  2787 Female, age 85, both hemispheres 17.5
                                  2115 Male, age 80, left hemisphere 16.7
                                  2109 Female, age 72, unknown 15.9
                                  2319 Female, age 91, both hemispheres 12.9
                                  2454 Male, age 74, left hemisphere 12.4
                                  Pontine raphe nucleus
                                  nTPM: 21.4
                                  2853 Male, age 76, midline 23.7
                                  2122 Female, age 85, midline 19.1
                                  Posteroventral cochlear nucleus
                                  nTPM: 17.0
                                  2371 Male, age 61, both hemispheres 22.0
                                  2752 Female, age 85, both hemispheres 21.1
                                  2070 Male, age 76, both hemispheres 16.9
                                  2341 Male, age 80, both hemispheres 13.5
                                  2135 Female, age 91, both hemispheres 11.4
                                  Prepositus hypoglossal nucleus
                                  nTPM: 25.1
                                  2086 Male, age 80, both hemispheres 27.4
                                  2855 Female, age 85, right hemisphere 22.8
                                  Principal sensory trigeminal nucleus
                                  nTPM: 20.3
                                  2324 Male, age 76, both hemispheres 26.9
                                  2158 Male, age 61, both hemispheres 20.7
                                  2008 Male, age 80, left hemisphere 19.7
                                  2367 Female, age 91, left hemisphere 13.8
                                  Reticular pontine nucleus, caudal
                                  nTPM: 17.4
                                  2332 Male, age 80, right hemisphere 20.3
                                  2092 Male, age 76, both hemispheres 19.2
                                  2457 Female, age 91, both hemispheres 15.5
                                  2559 Male, age 74, both hemispheres 14.8
                                  Reticular pontine nucleus, oral
                                  nTPM: 16.5
                                  2167 Male, age 76, both hemispheres 19.9
                                  1939 Male, age 80, both hemispheres 18.1
                                  2012 Female, age 85, both hemispheres 17.9
                                  2366 Female, age 91, both hemispheres 16.3
                                  2361 Male, age 74, both hemispheres 10.1
                                  Reticulotegmental nucleus
                                  nTPM: 20.9
                                  2325 Male, age 76, both hemispheres 22.7
                                  2322 Female, age 91, both hemispheres 20.7
                                  2333 Male, age 80, both hemispheres 20.5
                                  2452 Male, age 74, both hemispheres 19.6
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 22.0
                                  2642 Male, age 74, both hemispheres 26.8
                                  2390 Female, age 91, both hemispheres 23.1
                                  2447 Male, age 76, both hemispheres 21.3
                                  2308 Male, age 80, both hemispheres 20.4
                                  2312 Male, age 61, both hemispheres 18.1
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 20.0
                                  2625 Male, age 61, both hemispheres 23.5
                                  2389 Female, age 91, both hemispheres 21.9
                                  2386 Female, age 85, both hemispheres 20.5
                                  2066 Male, age 76, right hemisphere 17.8
                                  2033 Male, age 80, both hemispheres 16.3
                                  Spinal trigeminal nucleus, oral
                                  nTPM: 20.3
                                  1978 Male, age 76, both hemispheres 21.3
                                  2737 Female, age 85, both hemispheres 20.7
                                  2164 Male, age 80, both hemispheres 18.8
                                  Spinal vestibular nucleus
                                  nTPM: 18.1
                                  2384 Male, age 74, both hemispheres 20.3
                                  2186 Female, age 91, both hemispheres 19.5
                                  2806 Female, age 85, both hemispheres 19.3
                                  2796 Male, age 61, both hemispheres 17.4
                                  2780 Male, age 80, both hemispheres 16.8
                                  2748 Male, age 76, both hemispheres 15.2
                                  Subcoeruleus area
                                  nTPM: 20.5
                                  2323 Female, age 91, left hemisphere 22.7
                                  2451 Male, age 74, both hemispheres 21.4
                                  2089 Male, age 76, left hemisphere 21.1
                                  1958 Male, age 80, both hemispheres 19.2
                                  2369 Female, age 85, left hemisphere 18.2
                                  Superior olive
                                  nTPM: 17.9
                                  2364 Male, age 74, right hemisphere 19.0
                                  2561 Female, age 91, both hemispheres 18.2
                                  1875 Female, age 85, both hemispheres 17.8
                                  2329 Male, age 80, right hemisphere 17.2
                                  2020 Male, age 76, both hemispheres 17.0
                                  Superior vestibular nucleus
                                  nTPM: 27.0
                                  2383 Male, age 74, both hemispheres 33.7
                                  2061 Male, age 76, both hemispheres 25.9
                                  2015 Male, age 80, both hemispheres 21.3
                                  Ventral medullary reticular nucleus
                                  nTPM: 21.7
                                  2372 Male, age 61, both hemispheres 28.1
                                  2060 Male, age 76, both hemispheres 15.4
                                  Ventral periolivary nuclei
                                  nTPM: 19.5
                                  2130 Female, age 85, both hemispheres 23.4
                                  2165 Male, age 80, both hemispheres 19.5
                                  2794 Female, age 91, left hemisphere 18.2
                                  2023 Male, age 76, both hemispheres 16.9
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 21.0
                                  2302 Female, age 91, both hemispheres 27.0
                                  2180 Male, age 61, both hemispheres 21.3
                                  2741 Female, age 85, both hemispheres 20.8
                                  1986 Male, age 76, both hemispheres 18.6
                                  2118 Male, age 80, both hemispheres 17.1
                                  Ventrolateral tegmental area, A5 NE cell group
                                  nTPM: 19.0
                                  1959 Male, age 76, both hemispheres 20.9
                                  2359 Male, age 61, both hemispheres 19.4
                                  2840 Female, age 85, both hemispheres 18.9
                                  2456 Female, age 91, both hemispheres 18.5
                                  2449 Male, age 74, both hemispheres 18.4
                                  2161 Male, age 80, both hemispheres 17.9

                                  PONS AND MEDULLA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 37.3
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Locus coeruleus
                                  Scaled Tags Per Million: 28.7
                                  FF:10182-103D2 60 years, female 36.6
                                  FF:10165-103B3 76 years, female 20.7
                                  Medulla oblongata
                                  Scaled Tags Per Million: 37.3
                                  FF:10174-103C3 60 years, female 43.1
                                  FF:10038-101F2 18-64 years, mixed 41.5
                                  FF:10155-103A2 76 years, female 27.3
                                  Pons
                                  Scaled Tags Per Million: 20.8
                                  FF:10033-101E6 18-54 years, mixed 20.8

                                  PONS AND MEDULLA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 27.2
                                  Pig sample Sample description nTPM
                                  24.125.627.323.927.502468101214161820222426
                                  24.125.627.323.927.502468101214161820222426
                                  Medulla oblongata
                                  nTPM: 25.7
                                  Samples: 4

                                  Max nTPM: 27.5
                                  Min nTPM: 23.9
                                  Sample A Female 24.1
                                  Sample B Female 27.2
                                  Sample C Male 27.5
                                  Sample D Male 23.9
                                  22.424.429.222.337.605101520253035
                                  22.424.429.222.337.605101520253035
                                  Pons
                                  nTPM: 27.2
                                  Samples: 4

                                  Max nTPM: 37.6
                                  Min nTPM: 22.3
                                  Sample A Female 37.6
                                  Sample B Female 26.4
                                  Sample C Male 22.3
                                  Sample D Male 22.4

                                  PONS AND MEDULLA - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 3.0
                                  Mouse sample Sample description nTPM
                                  2.93.03.12.83.20.00.51.01.52.02.53.0
                                  2.93.03.12.83.20.00.51.01.52.02.53.0
                                  Pons and medulla
                                  nTPM: 3.0
                                  Samples: 4

                                  Max nTPM: 3.2
                                  Min nTPM: 2.8
                                  Sample A Male 3.1
                                  Sample B Male 3.2
                                  Sample C Female 2.8
                                  Sample D Female 2.9

                                  PONS AND MEDULLA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 0.5
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 0.5
                                  70203579 Antisense, RP_050519_01_H07, Mouse strain C57BL/6J (56 days, male) 0.5
                                  71670713 Antisense, RP_050519_01_H07, Mouse strain C57BL/6J (56 days, male) 0.1
                                  Pons
                                  Expression energy: 0.3
                                  70203579 Antisense, RP_050519_01_H07, Mouse strain C57BL/6J (56 days, male) 0.3
                                  71670713 Antisense, RP_050519_01_H07, Mouse strain C57BL/6J (56 days, male) 0.1

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                                  The Human Protein Atlas

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                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


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