MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.8 nTPM
HPA Brain:29.0 nTPM
GTEx:2.8 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:12.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.8
2586 Male, age 75, left hemisphere 39.2
2828 Female, age 72, unknown 30.8
2019 Male, age 18, unknown 29.0
2666 Male, age 74, left hemisphere 28.8
1827 Male, age 72, unknown 27.2
2219 Male, age 76, both hemispheres 25.6
1833 Male, age 53, unknown 25.2
1830 Male, age 51, unknown 24.3
2411 Female, age 72, unknown 24.1
1870 Female, age 42, unknown 23.3
Dorsal raphe nucleus
nTPM: 22.4
2750 Male, age 76, both hemispheres 24.3
1828 Male, age 53, unknown 22.5
2047 Male, age 72, unknown 22.1
2016 Female, age 72, unknown 21.7
2298 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 22.4
1848 Female, age 42, unknown 23.2
2849 Male, age 72, unknown 22.8
1890 Male, age 53, unknown 22.7
2097 Female, age 72, unknown 21.0
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 29.0
2502 Female, age 75, unknown 30.0
1795 Male, age 51, unknown 29.4
1947 Male, age 18, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 21.9
2464 Female, age 72, unknown 23.9
1831 Male, age 72, unknown 23.6
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 19.3
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 23.3
2272 Male, age 74, both hemispheres 23.2
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 26.7
2007 Male, age 72, unknown 31.1
1816 Male, age 51, unknown 29.9
2407 Male, age 75, both hemispheres 29.6
1817 Female, age 42, unknown 28.7
1815 Male, age 53, unknown 27.6
1944 Female, age 72, unknown 26.6
2667 Female, age 75, unknown 26.3
2316 Male, age 76, right hemisphere 26.2
2825 Male, age 18, unknown 24.2
2224 Female, age 72, unknown 22.0
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 26.7
2584 Male, age 75, left hemisphere 33.3
2785 Male, age 18, unknown 29.9
2588 Male, age 74, left hemisphere 29.4
2227 Male, age 72, unknown 27.0
1904 Male, age 53, unknown 26.6
2769 Male, age 72, unknown 26.5
2725 Female, age 75, unknown 25.8
2823 Male, age 76, right hemisphere 25.4
2503 Female, age 72, unknown 25.3
1865 Male, age 51, unknown 25.0
1954 Female, age 42, unknown 24.3
1821 Female, age 72, unknown 22.5
Substantia nigra
nTPM: 24.8
2583 Male, age 75, right hemisphere 30.2
2665 Male, age 74, both hemispheres 28.0
2590 Female, age 75, unknown 26.2
1916 Female, age 42, unknown 26.1
1889 Female, age 72, unknown 25.0
1941 Male, age 53, unknown 25.0
1851 Male, age 51, unknown 24.8
2699 Male, age 18, unknown 21.7
2409 Female, age 72, unknown 21.0
2241 Male, age 72, unknown 19.7
Superior colliculus
nTPM: 26.7
2664 Male, age 75, both hemispheres 33.2
2261 Male, age 18, unknown 28.8
1796 Male, age 53, unknown 28.7
2087 Female, age 72, unknown 28.3
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.8
1839 Male, age 51, unknown 25.3
2668 Female, age 75, unknown 25.1
1895 Male, age 76, right hemisphere 22.8
2587 Male, age 74, left hemisphere 22.5
Ventral tegmental area
nTPM: 23.4
1942 Male, age 51, unknown 25.6
2223 Female, age 72, unknown 23.6
2410 Female, age 72, unknown 23.4
2021 Male, age 53, unknown 23.0
2218 Male, age 76, both hemispheres 23.0
1915 Female, age 42, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.8
Samples: 139

Max nTPM: 6.2
Min nTPM: 1.2
Std nTPM: 0.6
Median nTPM: 2.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 4.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 3.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 3.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 3.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 3.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 3.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.3
FF:10158-103A5 76 years, female 44.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.2
Samples: 4

Max nTPM: 18.6
Min nTPM: 16.0
Sample A Female 17.0
Sample B Female 16.0
Sample C Male 18.6
Sample D Male 17.3
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 18.3
Min nTPM: 13.8
Sample A Female 17.1
Sample B Female 13.8
Sample C Male 18.3
Sample D Male 15.6
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 15.4
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 15.4
Sample D Male 13.8
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 16.1
Sample A Female 16.3
Sample B Female 17.0
Sample C Male 16.1
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.2
Sample A Male 11.2
Sample B Male 12.3
Sample C Female 11.2
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71920491 Antisense, RP_050915_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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