MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA Brain:24.4 nTPM
GTEx:5.9 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:7.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2586 Male, age 75, left hemisphere 29.7
1830 Male, age 51, unknown 26.0
2219 Male, age 76, both hemispheres 25.4
2666 Male, age 74, left hemisphere 25.3
2019 Male, age 18, unknown 24.4
1827 Male, age 72, unknown 23.7
1833 Male, age 53, unknown 23.2
2411 Female, age 72, unknown 22.6
2828 Female, age 72, unknown 22.4
1870 Female, age 42, unknown 21.0
Dorsal raphe nucleus
nTPM: 19.8
2750 Male, age 76, both hemispheres 21.4
2016 Female, age 72, unknown 21.0
2047 Male, age 72, unknown 20.0
1828 Male, age 53, unknown 19.0
2298 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 22.5
2849 Male, age 72, unknown 25.2
1848 Female, age 42, unknown 22.4
1890 Male, age 53, unknown 21.4
2097 Female, age 72, unknown 20.9
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 21.6
2502 Female, age 75, unknown 22.8
1947 Male, age 18, unknown 21.8
1795 Male, age 51, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 20.9
2464 Female, age 72, unknown 21.8
1840 Male, age 53, unknown 21.7
1831 Male, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 19.5
Periaquaductal grey, lateral
nTPM: 22.4
2140 Male, age 76, both hemispheres 23.2
2053 Male, age 18, unknown 22.8
2272 Male, age 74, both hemispheres 21.2
Pretectal area
nTPM: 22.2
2407 Male, age 75, both hemispheres 28.7
2316 Male, age 76, right hemisphere 27.1
1815 Male, age 53, unknown 22.8
2667 Female, age 75, unknown 22.5
2224 Female, age 72, unknown 21.7
2007 Male, age 72, unknown 21.3
2825 Male, age 18, unknown 20.8
1816 Male, age 51, unknown 20.5
2273 Male, age 74, both hemispheres 20.4
1817 Female, age 42, unknown 19.4
1944 Female, age 72, unknown 19.4
Red nucleus
nTPM: 24.2
2584 Male, age 75, left hemisphere 29.8
2588 Male, age 74, left hemisphere 27.5
2823 Male, age 76, right hemisphere 27.3
1904 Male, age 53, unknown 26.1
1865 Male, age 51, unknown 24.7
2769 Male, age 72, unknown 24.7
2227 Male, age 72, unknown 24.2
2785 Male, age 18, unknown 23.9
2725 Female, age 75, unknown 22.6
2503 Female, age 72, unknown 20.8
1821 Female, age 72, unknown 19.9
1954 Female, age 42, unknown 19.5
Substantia nigra
nTPM: 20.5
2583 Male, age 75, right hemisphere 24.3
2409 Female, age 72, unknown 23.8
2590 Female, age 75, unknown 22.8
2665 Male, age 74, both hemispheres 22.7
2699 Male, age 18, unknown 22.3
1941 Male, age 53, unknown 19.3
1889 Female, age 72, unknown 19.1
1851 Male, age 51, unknown 18.9
2241 Male, age 72, unknown 16.6
1916 Female, age 42, unknown 15.4
Superior colliculus
nTPM: 22.9
1913 Female, age 42, unknown 26.9
1995 Male, age 72, unknown 25.5
1839 Male, age 51, unknown 24.1
1895 Male, age 76, right hemisphere 23.6
2664 Male, age 75, both hemispheres 23.4
2087 Female, age 72, unknown 22.5
2261 Male, age 18, unknown 21.4
2587 Male, age 74, left hemisphere 21.4
1796 Male, age 53, unknown 20.5
2668 Female, age 75, unknown 20.1
Ventral tegmental area
nTPM: 19.6
2021 Male, age 53, unknown 22.4
2223 Female, age 72, unknown 21.4
1942 Male, age 51, unknown 20.8
2218 Male, age 76, both hemispheres 18.8
1915 Female, age 42, unknown 17.4
2410 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.9
Samples: 139

Max nTPM: 12.7
Min nTPM: 2.0
Std nTPM: 1.6
Median nTPM: 5.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 11.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 8.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 8.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 8.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.0
Sample A Female 8.2
Sample B Female 6.0
Sample C Male 5.0
Sample D Male 8.4
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.6
Sample A Female 7.9
Sample B Female 5.6
Sample C Male 8.2
Sample D Male 6.0
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.9
Min nTPM: 4.8
Sample B Female 5.9
Sample C Male 4.8
Sample D Male 5.7
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 5.1
Sample A Female 10.4
Sample B Female 8.3
Sample C Male 5.1
Sample D Male 7.1

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