HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:10.2 nTPM
GTEx:17.6 nTPM
FANTOM5:5.7 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:35.7 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037413Antibody HPA037588
Glial cells LowLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Hippocampus
nTPM: 8.7
1898 Male, age 80, left hemisphere 11.1
2529 Female, age 94, left hemisphere 10.4
1855 Male, age 76, left hemisphere 9.2
1911 Female, age 85, right hemisphere 8.8
2148 Female, age 91, left hemisphere 7.0
2621 Female, age 67, right hemisphere 5.7
Dentate gyrus
nTPM: 8.5
1927 Female, age 91, both hemispheres 11.6
2530 Female, age 94, left hemisphere 9.6
2010 Male, age 76, both hemispheres 8.9
2528 Male, age 74, both hemispheres 8.9
2246 Female, age 85, both hemispheres 7.2
2531 Female, age 67, both hemispheres 4.6
Entorhinal gyrus
nTPM: 8.2
1938 Female, age 85, left hemisphere 11.7
1787 Male, age 76, left hemisphere 8.6
2764 Male, age 80, right hemisphere 7.7
2117 Female, age 91, right hemisphere 7.5
2686 Male, age 75, right hemisphere 7.2
2613 Female, age 94, left hemisphere 6.5
Hippocampus, CA1
nTPM: 9.6
2749 Male, age 80, left hemisphere 12.4
1873 Female, age 85, both hemispheres 12.3
2527 Male, age 74, both hemispheres 8.5
2045 Male, age 76, both hemispheres 7.7
2082 Female, age 91, right hemisphere 7.0
Hippocampus, CA2
nTPM: 9.2
1892 Male, age 76, both hemispheres 12.8
1940 Female, age 85, left hemisphere 10.7
2249 Male, age 74, both hemispheres 9.0
1963 Male, age 80, left hemisphere 8.1
2113 Female, age 91, right hemisphere 7.5
2437 Female, age 94, left hemisphere 7.1
Hippocampus, CA3
nTPM: 8.7
1867 Male, age 76, both hemispheres 11.0
1891 Female, age 85, both hemispheres 10.1
2137 Male, age 80, left hemisphere 10.0
2436 Male, age 74, both hemispheres 8.0
2861 Female, age 67, both hemispheres 7.0
2620 Female, age 94, left hemisphere 6.0
Parahippocampal cortex
nTPM: 9.2
1850 Male, age 80, both hemispheres 13.0
2693 Female, age 94, both hemispheres 10.7
2250 Female, age 67, right hemisphere 10.0
1933 Female, age 85, both hemispheres 9.7
2692 Male, age 74, both hemispheres 9.3
1990 Female, age 91, right hemisphere 8.9
2245 Female, age 91, both hemispheres 8.8
2018 Male, age 76, both hemispheres 8.4
2532 Female, age 72, left hemisphere 7.2
2622 Female, age 67, right hemisphere 5.6
Perirhinal gyrus
nTPM: 10.2
1841 Female, age 85, right hemisphere 12.0
1794 Male, age 80, right hemisphere 11.0
1847 Female, age 91, left hemisphere 10.2
2848 Male, age 76, right hemisphere 9.3
2521 Female, age 94, right hemisphere 8.4
Subiculum
nTPM: 7.6
1901 Male, age 80, both hemispheres 9.5
2438 Female, age 94, left hemisphere 8.3
2729 Female, age 91, right hemisphere 8.0
1977 Female, age 85, both hemispheres 7.7
2042 Male, age 76, both hemispheres 6.7
2619 Male, age 74, both hemispheres 5.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.6
Samples: 197

Max nTPM: 49.3
Min nTPM: 6.7
Std nTPM: 4.9
Median nTPM: 16.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 49.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 33.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 30.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 29.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 29.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 29.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 27.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 26.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 25.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 25.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 25.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.7
FF:10153-102I9 76 years, female 6.2
FF:10169-103B7 60 years, female 5.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.3
Pig sample Sample description nTPM
Subiculum
nTPM: 24.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 21.8
Sample A Female 31.3
Sample B Female 21.9
Sample C Male 21.8
Sample D Male 22.8
Dorsal hippocampus
nTPM: 36.3
Samples: 4

Max nTPM: 46.7
Min nTPM: 28.4
Sample A Female 46.7
Sample B Female 37.8
Sample C Male 28.4
Sample D Male 32.2
Entorhinal cortex
nTPM: 22.5
Samples: 4

Max nTPM: 26.0
Min nTPM: 18.9
Sample A Female 22.2
Sample B Female 26.0
Sample C Male 22.9
Sample D Male 18.9
Ventral hippocampus
nTPM: 26.2
Samples: 4

Max nTPM: 33.6
Min nTPM: 19.1
Sample A Female 27.1
Sample B Female 24.9
Sample C Male 19.1
Sample D Male 33.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 36.7
Min nTPM: 34.5
Sample A Male 34.5
Sample B Male 35.4
Sample C Female 36.5
Sample D Female 36.7
Hippocampal formation
nTPM: 34.6
Samples: 4

Max nTPM: 40.0
Min nTPM: 32.2
Sample A Male 40.0
Sample B Male 32.9
Sample C Female 32.2
Sample D Female 33.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
74990481 Antisense, RP_060410_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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