MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.7 nTPM
HPA Brain:102.8 nTPM
GTEx:78.7 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:65.6 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.2
2586 Male, age 75, left hemisphere 128.6
2019 Male, age 18, unknown 103.8
2411 Female, age 72, unknown 98.4
2828 Female, age 72, unknown 96.9
1870 Female, age 42, unknown 93.1
1830 Male, age 51, unknown 92.5
2666 Male, age 74, left hemisphere 92.0
1833 Male, age 53, unknown 87.0
2219 Male, age 76, both hemispheres 82.3
1827 Male, age 72, unknown 77.2
Dorsal raphe nucleus
nTPM: 88.2
1828 Male, age 53, unknown 95.2
2047 Male, age 72, unknown 91.8
2016 Female, age 72, unknown 89.5
2750 Male, age 76, both hemispheres 88.3
2298 Female, age 72, unknown 76.2
Inferior colliculus
nTPM: 75.6
1848 Female, age 42, unknown 81.3
2849 Male, age 72, unknown 76.3
1890 Male, age 53, unknown 76.0
2097 Female, age 72, unknown 68.7
Median raphe nucleus
nTPM: 86.3
2220 Male, age 76, midline 86.3
Periaquaductal grey, anterior
nTPM: 82.4
2502 Female, age 75, unknown 93.7
1795 Male, age 51, unknown 77.7
1947 Male, age 18, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 73.6
2464 Female, age 72, unknown 84.9
1840 Male, age 53, unknown 77.0
1831 Male, age 72, unknown 73.7
2850 Male, age 76, both hemispheres 58.9
Periaquaductal grey, lateral
nTPM: 69.8
2053 Male, age 18, unknown 75.2
2272 Male, age 74, both hemispheres 72.0
2140 Male, age 76, both hemispheres 62.3
Pretectal area
nTPM: 75.4
2407 Male, age 75, both hemispheres 96.0
1817 Female, age 42, unknown 80.3
2825 Male, age 18, unknown 79.6
2667 Female, age 75, unknown 78.9
2007 Male, age 72, unknown 77.0
1815 Male, age 53, unknown 74.8
2273 Male, age 74, both hemispheres 72.8
1944 Female, age 72, unknown 69.1
2224 Female, age 72, unknown 68.0
2316 Male, age 76, right hemisphere 66.6
1816 Male, age 51, unknown 66.1
Red nucleus
nTPM: 102.8
2588 Male, age 74, left hemisphere 115.7
1865 Male, age 51, unknown 111.2
2769 Male, age 72, unknown 110.3
2227 Male, age 72, unknown 109.0
2503 Female, age 72, unknown 108.1
2584 Male, age 75, left hemisphere 106.6
2785 Male, age 18, unknown 104.6
1904 Male, age 53, unknown 104.1
1954 Female, age 42, unknown 98.9
1821 Female, age 72, unknown 98.0
2725 Female, age 75, unknown 85.1
2823 Male, age 76, right hemisphere 82.5
Substantia nigra
nTPM: 87.9
2583 Male, age 75, right hemisphere 100.2
1851 Male, age 51, unknown 96.7
1916 Female, age 42, unknown 93.4
2665 Male, age 74, both hemispheres 91.0
2590 Female, age 75, unknown 90.8
2409 Female, age 72, unknown 88.9
1941 Male, age 53, unknown 84.6
2699 Male, age 18, unknown 79.7
1889 Female, age 72, unknown 77.0
2241 Male, age 72, unknown 76.4
Superior colliculus
nTPM: 83.5
2664 Male, age 75, both hemispheres 110.2
1995 Male, age 72, unknown 92.1
1839 Male, age 51, unknown 88.5
2587 Male, age 74, left hemisphere 86.9
1913 Female, age 42, unknown 86.4
1796 Male, age 53, unknown 79.8
2668 Female, age 75, unknown 79.8
2261 Male, age 18, unknown 76.3
2087 Female, age 72, unknown 70.6
1895 Male, age 76, right hemisphere 64.9
Ventral tegmental area
nTPM: 89.2
2223 Female, age 72, unknown 106.9
2410 Female, age 72, unknown 97.4
2021 Male, age 53, unknown 88.1
1915 Female, age 42, unknown 87.3
1942 Male, age 51, unknown 84.1
2218 Male, age 76, both hemispheres 71.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.7
Samples: 139

Max nTPM: 135.4
Min nTPM: 32.8
Std nTPM: 21.3
Median nTPM: 76.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 135.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 132.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 132.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 124.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 123.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 121.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 119.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 118.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 117.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.3
FF:10158-103A5 76 years, female 79.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 23.6
Sample A Female 32.9
Sample B Female 26.3
Sample C Male 31.3
Sample D Male 23.6
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 31.6
Min nTPM: 20.4
Sample A Female 29.9
Sample B Female 21.1
Sample C Male 31.6
Sample D Male 20.4
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 26.0
Min nTPM: 19.8
Sample B Female 21.0
Sample C Male 26.0
Sample D Male 19.8
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.3
Sample A Female 25.7
Sample B Female 24.1
Sample C Male 27.7
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 67.3
Min nTPM: 62.1
Sample A Male 66.1
Sample B Male 62.1
Sample C Female 67.1
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 6.5

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