HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:68.7 nTPM
HPA Brain:83.9 nTPM
GTEx:68.7 nTPM
FANTOM5:48.8 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:105.8 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038350
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 83.9
Sample id Sample description nTPM
Hippocampus
nTPM: 81.7
1898 Male, age 80, left hemisphere 87.0
1855 Male, age 76, left hemisphere 86.4
2148 Female, age 91, left hemisphere 84.6
2529 Female, age 94, left hemisphere 83.0
1911 Female, age 85, right hemisphere 75.2
2621 Female, age 67, right hemisphere 73.8
Dentate gyrus
nTPM: 80.0
2530 Female, age 94, left hemisphere 95.3
2010 Male, age 76, both hemispheres 87.0
2528 Male, age 74, both hemispheres 76.2
2531 Female, age 67, both hemispheres 75.4
2246 Female, age 85, both hemispheres 73.7
1927 Female, age 91, both hemispheres 72.5
Entorhinal gyrus
nTPM: 83.9
2117 Female, age 91, right hemisphere 93.7
2764 Male, age 80, right hemisphere 88.8
2613 Female, age 94, left hemisphere 84.7
1787 Male, age 76, left hemisphere 81.9
1938 Female, age 85, left hemisphere 78.4
2686 Male, age 75, right hemisphere 76.2
Hippocampus, CA1
nTPM: 83.8
2749 Male, age 80, left hemisphere 102.8
2045 Male, age 76, both hemispheres 86.3
1873 Female, age 85, both hemispheres 81.3
2082 Female, age 91, right hemisphere 75.7
2527 Male, age 74, both hemispheres 72.8
Hippocampus, CA2
nTPM: 79.9
1963 Male, age 80, left hemisphere 92.7
1892 Male, age 76, both hemispheres 80.9
2437 Female, age 94, left hemisphere 79.7
2113 Female, age 91, right hemisphere 77.4
1940 Female, age 85, left hemisphere 76.8
2249 Male, age 74, both hemispheres 71.8
Hippocampus, CA3
nTPM: 76.7
2137 Male, age 80, left hemisphere 85.9
2620 Female, age 94, left hemisphere 84.7
1867 Male, age 76, both hemispheres 76.3
2861 Female, age 67, both hemispheres 75.1
1891 Female, age 85, both hemispheres 71.7
2436 Male, age 74, both hemispheres 66.6
Parahippocampal cortex
nTPM: 72.0
2018 Male, age 76, both hemispheres 80.2
1850 Male, age 80, both hemispheres 76.8
2692 Male, age 74, both hemispheres 76.5
2245 Female, age 91, both hemispheres 75.8
1933 Female, age 85, both hemispheres 72.9
1990 Female, age 91, right hemisphere 72.9
2622 Female, age 67, right hemisphere 72.9
2532 Female, age 72, left hemisphere 70.2
2693 Female, age 94, both hemispheres 61.3
2250 Female, age 67, right hemisphere 60.7
Perirhinal gyrus
nTPM: 71.1
1794 Male, age 80, right hemisphere 76.8
1847 Female, age 91, left hemisphere 76.5
2848 Male, age 76, right hemisphere 69.8
1841 Female, age 85, right hemisphere 67.7
2521 Female, age 94, right hemisphere 64.8
Subiculum
nTPM: 72.5
1901 Male, age 80, both hemispheres 78.8
2729 Female, age 91, right hemisphere 77.5
1977 Female, age 85, both hemispheres 74.5
2619 Male, age 74, both hemispheres 73.9
2042 Male, age 76, both hemispheres 73.7
2438 Female, age 94, left hemisphere 56.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.7
Samples: 197

Max nTPM: 134.4
Min nTPM: 16.4
Std nTPM: 15.5
Median nTPM: 67.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 134.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 119.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 117.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 113.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 112.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 106.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 103.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 97.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 97.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 96.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 95.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.8
FF:10153-102I9 76 years, female 65.5
FF:10169-103B7 60 years, female 32.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Subiculum
nTPM: 25.3
Samples: 4

Max nTPM: 31.4
Min nTPM: 21.6
Sample A Female 31.4
Sample B Female 23.2
Sample C Male 25.1
Sample D Male 21.6
Dorsal hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 33.4
Min nTPM: 19.0
Sample A Female 33.4
Sample B Female 26.8
Sample C Male 24.5
Sample D Male 19.0
Entorhinal cortex
nTPM: 23.2
Samples: 4

Max nTPM: 26.4
Min nTPM: 19.8
Sample A Female 26.4
Sample B Female 19.8
Sample C Male 26.0
Sample D Male 20.6
Ventral hippocampus
nTPM: 26.7
Samples: 4

Max nTPM: 32.7
Min nTPM: 18.9
Sample A Female 28.0
Sample B Female 18.9
Sample C Male 32.7
Sample D Male 27.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.8
Samples: 4

Max nTPM: 108.3
Min nTPM: 103.2
Sample A Male 108.3
Sample B Male 103.2
Sample C Female 106.8
Sample D Female 104.9
Hippocampal formation
nTPM: 82.9
Samples: 4

Max nTPM: 92.5
Min nTPM: 75.3
Sample A Male 92.5
Sample B Male 75.4
Sample C Female 75.3
Sample D Female 88.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 6.7

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