MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:25.7 nTPM
GTEx:5.6 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:11.6 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2828 Female, age 72, unknown 21.5
1827 Male, age 72, unknown 21.2
2586 Male, age 75, left hemisphere 19.9
2219 Male, age 76, both hemispheres 19.3
2666 Male, age 74, left hemisphere 19.3
2019 Male, age 18, unknown 16.9
1870 Female, age 42, unknown 13.6
1833 Male, age 53, unknown 12.7
1830 Male, age 51, unknown 12.0
2411 Female, age 72, unknown 10.3
Dorsal raphe nucleus
nTPM: 13.5
2298 Female, age 72, unknown 16.5
1828 Male, age 53, unknown 14.5
2047 Male, age 72, unknown 13.5
2750 Male, age 76, both hemispheres 12.2
2016 Female, age 72, unknown 11.1
Inferior colliculus
nTPM: 16.7
2097 Female, age 72, unknown 18.1
1890 Male, age 53, unknown 17.4
2849 Male, age 72, unknown 16.3
1848 Female, age 42, unknown 15.0
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Periaquaductal grey, anterior
nTPM: 20.1
1795 Male, age 51, unknown 25.5
1947 Male, age 18, unknown 19.1
2502 Female, age 75, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 18.4
2850 Male, age 76, both hemispheres 21.6
1831 Male, age 72, unknown 20.8
1840 Male, age 53, unknown 16.4
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 24.4
2272 Male, age 74, both hemispheres 34.7
2140 Male, age 76, both hemispheres 20.4
2053 Male, age 18, unknown 18.1
Pretectal area
nTPM: 25.7
1816 Male, age 51, unknown 42.4
1944 Female, age 72, unknown 31.4
2007 Male, age 72, unknown 29.9
1815 Male, age 53, unknown 28.2
1817 Female, age 42, unknown 27.9
2273 Male, age 74, both hemispheres 27.6
2667 Female, age 75, unknown 23.8
2407 Male, age 75, both hemispheres 22.7
2825 Male, age 18, unknown 18.0
2224 Female, age 72, unknown 16.6
2316 Male, age 76, right hemisphere 14.3
Red nucleus
nTPM: 15.5
2785 Male, age 18, unknown 21.9
2584 Male, age 75, left hemisphere 21.2
2725 Female, age 75, unknown 20.4
2588 Male, age 74, left hemisphere 19.3
2823 Male, age 76, right hemisphere 16.5
1954 Female, age 42, unknown 13.7
1904 Male, age 53, unknown 13.6
2769 Male, age 72, unknown 13.6
1865 Male, age 51, unknown 12.7
2503 Female, age 72, unknown 12.1
2227 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 10.3
Substantia nigra
nTPM: 15.6
1889 Female, age 72, unknown 19.9
2583 Male, age 75, right hemisphere 19.7
1941 Male, age 53, unknown 17.9
2665 Male, age 74, both hemispheres 17.5
1851 Male, age 51, unknown 14.9
2590 Female, age 75, unknown 14.1
1916 Female, age 42, unknown 14.0
2241 Male, age 72, unknown 13.5
2699 Male, age 18, unknown 12.8
2409 Female, age 72, unknown 12.3
Superior colliculus
nTPM: 20.4
2261 Male, age 18, unknown 28.7
2087 Female, age 72, unknown 27.9
2664 Male, age 75, both hemispheres 25.0
1796 Male, age 53, unknown 23.0
2668 Female, age 75, unknown 20.7
1995 Male, age 72, unknown 18.4
1913 Female, age 42, unknown 17.5
1839 Male, age 51, unknown 14.7
2587 Male, age 74, left hemisphere 14.7
1895 Male, age 76, right hemisphere 13.6
Ventral tegmental area
nTPM: 15.8
2223 Female, age 72, unknown 21.8
2218 Male, age 76, both hemispheres 16.8
1942 Male, age 51, unknown 15.4
2021 Male, age 53, unknown 13.9
1915 Female, age 42, unknown 13.5
2410 Female, age 72, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 9.9
Min nTPM: 1.9
Std nTPM: 1.8
Median nTPM: 5.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 9.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 9.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 8.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 8.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 8.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 8.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.1
Sample A Female 11.3
Sample B Female 10.2
Sample C Male 15.5
Sample D Male 9.1
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 9.8
Sample C Male 44.1
Sample D Male 26.6
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 14.8
Min nTPM: 10.2
Sample B Female 10.2
Sample C Male 14.8
Sample D Male 11.8
Superior colliculi
nTPM: 18.6
Samples: 4

Max nTPM: 25.9
Min nTPM: 13.1
Sample A Female 14.8
Sample B Female 13.1
Sample C Male 25.9
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.1
Sample A Male 11.6
Sample B Male 10.1
Sample C Female 13.1
Sample D Female 11.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
71020897 Antisense, RP_050512_03_H06, Mouse strain C57BL/6J (56 days, male) 6.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org