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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:19.9 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:8.9 nTPM
Allen mouse:0.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Area postrema
nTPM: 15.1
2306 Male, age 80, both hemispheres 22.6
2799 Male, age 61, both hemispheres 12.1
2054 Male, age 76, both hemispheres 10.5
Dorsal medullary reticular nucleus
nTPM: 15.2
2373 Male, age 61, both hemispheres 17.8
2088 Male, age 76, both hemispheres 14.6
2040 Female, age 85, both hemispheres 13.3
Dorsal motor vagal complex
nTPM: 12.0
2185 Male, age 76, both hemispheres 14.4
2000 Male, age 74, unknown 13.4
2643 Male, age 74, both hemispheres 13.3
2807 Female, age 85, both hemispheres 12.9
2797 Male, age 61, both hemispheres 11.5
2813 Female, age 72, unknown 10.6
2844 Male, age 55, unknown 10.1
2133 Female, age 91, both hemispheres 9.8
Gigantocellular reticular nuclei, medullary
nTPM: 14.6
2314 Male, age 61, both hemispheres 18.8
2022 Male, age 76, right hemisphere 17.0
2310 Male, age 80, both hemispheres 14.3
1876 Female, age 85, both hemispheres 13.6
2387 Female, age 91, both hemispheres 12.9
2462 Male, age 74, both hemispheres 11.2
Gigantocellular reticular nuclei, pars
nTPM: 14.2
2330 Male, age 80, both hemispheres 16.7
2336 Male, age 61, both hemispheres 16.0
2706 Male, age 80, both hemispheres 15.7
2084 Female, age 85, both hemispheres 13.5
2168 Male, age 76, both hemispheres 9.1
Inferior olive
nTPM: 17.3
2178 Male, age 61, both hemispheres 20.7
2379 Male, age 80, both hemispheres 19.2
2628 Female, age 91, both hemispheres 15.9
2563 Male, age 74, both hemispheres 15.7
2085 Female, age 85, both hemispheres 15.1
Lateral medullary reticular nucleus
nTPM: 17.4
2852 Male, age 80, both hemispheres 23.6
2374 Male, age 61, both hemispheres 20.0
2190 Female, age 85, both hemispheres 17.2
2305 Male, age 74, both hemispheres 16.9
2804 Female, age 91, both hemispheres 13.8
2044 Male, age 76, both hemispheres 13.2
Medial olivary nucleus
nTPM: 17.8
1943 Male, age 61, both hemispheres 19.2
2851 Male, age 80, both hemispheres 18.2
1962 Male, age 76, both hemispheres 17.9
2138 Female, age 91, both hemispheres 16.0
Medial vestibular nucleus
nTPM: 12.8
2624 Male, age 61, both hemispheres 15.6
2801 Male, age 74, both hemispheres 14.8
2803 Female, age 91, both hemispheres 13.8
2093 Male, age 80, both hemispheres 13.6
2743 Female, age 85, both hemispheres 11.6
2134 Male, age 76, both hemispheres 7.7
Motor hypoglossal nucleus
nTPM: 13.6
2182 Male, age 80, both hemispheres 21.3
2125 Female, age 91, both hemispheres 14.3
2132 Female, age 85, both hemispheres 13.6
2461 Male, age 61, both hemispheres 10.6
2277 Male, age 76, both hemispheres 8.3
Nucleus ambiguus
nTPM: 17.7
2096 Female, age 85, both hemispheres 20.7
2071 Male, age 76, both hemispheres 14.8
Nucleus cuneatus
nTPM: 16.3
2380 Male, age 80, both hemispheres 21.3
2381 Male, age 80, both hemispheres 18.2
2376 Male, age 61, both hemispheres 17.0
2808 Female, age 85, both hemispheres 16.5
2805 Female, age 91, both hemispheres 16.3
2100 Male, age 76, both hemispheres 16.2
2564 Male, age 74, both hemispheres 14.9
2562 Male, age 61, both hemispheres 13.2
2131 Male, age 76, both hemispheres 13.0
Nucleus gracilis
nTPM: 19.9
2382 Male, age 80, both hemispheres 23.5
2299 Female, age 85, both hemispheres 19.7
2627 Male, age 74, both hemispheres 16.4
Nucleus raphe obscurus
nTPM: 19.0
2142 Male, age 76, midline 21.4
2800 Male, age 61, midline 19.1
2845 Female, age 85, midline 16.6
Nucleus raphe pallidus
nTPM: 17.6
1924 Male, age 61, midline 18.4
2145 Male, age 76, midline 18.1
2183 Male, age 80, midline 16.3
Nucleus tractus solitarii
nTPM: 10.3
2307 Male, age 80, both hemispheres 14.0
2191 Female, age 85, both hemispheres 11.3
2656 Male, age 76, both hemispheres 10.0
2144 Female, age 91, right hemisphere 5.8
Parvicellular reticular nuclei
nTPM: 15.1
2558 Male, age 74, both hemispheres 16.9
2095 Male, age 76, both hemispheres 14.5
2119 Male, age 80, both hemispheres 13.9
Parvicellular reticular nuclei, medullary
nTPM: 12.2
2189 Female, age 91, both hemispheres 12.6
2091 Female, age 85, both hemispheres 12.2
2181 Male, age 80, left hemisphere 11.7
Peritrigeminal nucleus
nTPM: 13.5
2067 Female, age 85, both hemispheres 14.1
2179 Male, age 61, both hemispheres 13.5
2136 Male, age 76, both hemispheres 12.9
Prepositus hypoglossal nucleus
nTPM: 14.1
2086 Male, age 80, both hemispheres 14.6
2855 Female, age 85, right hemisphere 13.7
Spinal trigeminal nucleus, caudal
nTPM: 14.7
2308 Male, age 80, both hemispheres 18.8
2312 Male, age 61, both hemispheres 16.3
2642 Male, age 74, both hemispheres 14.5
2447 Male, age 76, both hemispheres 12.5
2390 Female, age 91, both hemispheres 11.4
Spinal trigeminal nucleus, interpolar
nTPM: 11.3
2033 Male, age 80, both hemispheres 13.3
2386 Female, age 85, both hemispheres 11.9
2389 Female, age 91, both hemispheres 11.7
2625 Male, age 61, both hemispheres 10.7
2066 Male, age 76, right hemisphere 9.0
Spinal vestibular nucleus
nTPM: 14.0
2384 Male, age 74, both hemispheres 16.0
2780 Male, age 80, both hemispheres 14.4
2796 Male, age 61, both hemispheres 13.7
2748 Male, age 76, both hemispheres 13.6
2806 Female, age 85, both hemispheres 13.4
2186 Female, age 91, both hemispheres 13.0
Superior vestibular nucleus
nTPM: 11.7
2015 Male, age 80, both hemispheres 13.1
2061 Male, age 76, both hemispheres 11.4
2383 Male, age 74, both hemispheres 10.6
Ventral medullary reticular nucleus
nTPM: 17.1
2372 Male, age 61, both hemispheres 18.6
2060 Male, age 76, both hemispheres 15.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 15.0
2118 Male, age 80, both hemispheres 19.4
2180 Male, age 61, both hemispheres 16.1
1986 Male, age 76, both hemispheres 13.8
2302 Female, age 91, both hemispheres 13.6
2741 Female, age 85, both hemispheres 11.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 27.1
FF:10155-103A2 76 years, female 29.5
FF:10038-101F2 18-64 years, mixed 26.0
FF:10174-103C3 60 years, female 25.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 8.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 8.9
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 8.4
Sample C Male 9.9
Sample D Male 9.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
71378582 Antisense, RP_050517_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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