MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA Brain:39.2 nTPM
GTEx:36.4 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:82.8 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
1870 Female, age 42, unknown 40.7
2666 Male, age 74, left hemisphere 38.5
2828 Female, age 72, unknown 37.4
2019 Male, age 18, unknown 36.7
1827 Male, age 72, unknown 35.9
1830 Male, age 51, unknown 34.7
1833 Male, age 53, unknown 34.1
2219 Male, age 76, both hemispheres 32.1
2586 Male, age 75, left hemisphere 32.1
2411 Female, age 72, unknown 31.4
Dorsal raphe nucleus
nTPM: 33.5
2750 Male, age 76, both hemispheres 38.2
2298 Female, age 72, unknown 33.1
2047 Male, age 72, unknown 32.2
2016 Female, age 72, unknown 32.1
1828 Male, age 53, unknown 31.9
Inferior colliculus
nTPM: 33.5
1890 Male, age 53, unknown 34.5
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 32.8
2849 Male, age 72, unknown 32.8
Median raphe nucleus
nTPM: 38.8
2220 Male, age 76, midline 38.8
Periaquaductal grey, anterior
nTPM: 38.5
2502 Female, age 75, unknown 41.4
1795 Male, age 51, unknown 37.0
1947 Male, age 18, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 34.2
2850 Male, age 76, both hemispheres 39.1
1831 Male, age 72, unknown 33.3
1840 Male, age 53, unknown 33.1
2464 Female, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 35.8
2140 Male, age 76, both hemispheres 36.7
2272 Male, age 74, both hemispheres 36.0
2053 Male, age 18, unknown 34.9
Pretectal area
nTPM: 37.3
2007 Male, age 72, unknown 41.0
1817 Female, age 42, unknown 40.8
1944 Female, age 72, unknown 39.9
1815 Male, age 53, unknown 39.2
2273 Male, age 74, both hemispheres 38.8
1816 Male, age 51, unknown 38.3
2407 Male, age 75, both hemispheres 35.8
2224 Female, age 72, unknown 35.7
2825 Male, age 18, unknown 35.4
2316 Male, age 76, right hemisphere 34.2
2667 Female, age 75, unknown 31.4
Red nucleus
nTPM: 39.2
2725 Female, age 75, unknown 44.7
2503 Female, age 72, unknown 42.7
1865 Male, age 51, unknown 42.5
1904 Male, age 53, unknown 42.5
2785 Male, age 18, unknown 41.7
2227 Male, age 72, unknown 38.9
2769 Male, age 72, unknown 38.3
2823 Male, age 76, right hemisphere 37.2
1954 Female, age 42, unknown 36.7
1821 Female, age 72, unknown 35.3
2588 Male, age 74, left hemisphere 34.9
2584 Male, age 75, left hemisphere 34.4
Substantia nigra
nTPM: 34.7
2409 Female, age 72, unknown 37.9
1889 Female, age 72, unknown 37.4
2665 Male, age 74, both hemispheres 36.0
1851 Male, age 51, unknown 35.9
2583 Male, age 75, right hemisphere 35.4
1916 Female, age 42, unknown 35.0
2590 Female, age 75, unknown 33.7
2699 Male, age 18, unknown 33.1
2241 Male, age 72, unknown 32.1
1941 Male, age 53, unknown 30.9
Superior colliculus
nTPM: 35.3
1913 Female, age 42, unknown 40.4
1796 Male, age 53, unknown 38.1
1995 Male, age 72, unknown 37.3
2261 Male, age 18, unknown 37.2
2087 Female, age 72, unknown 35.7
2587 Male, age 74, left hemisphere 34.8
2668 Female, age 75, unknown 34.6
1895 Male, age 76, right hemisphere 34.2
1839 Male, age 51, unknown 32.2
2664 Male, age 75, both hemispheres 28.6
Ventral tegmental area
nTPM: 34.2
2218 Male, age 76, both hemispheres 36.7
2223 Female, age 72, unknown 36.4
1942 Male, age 51, unknown 33.9
2021 Male, age 53, unknown 33.4
1915 Female, age 42, unknown 32.5
2410 Female, age 72, unknown 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.4
Samples: 139

Max nTPM: 71.6
Min nTPM: 16.8
Std nTPM: 9.3
Median nTPM: 33.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 71.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 71.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 59.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 55.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 51.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.9
FF:10158-103A5 76 years, female 86.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.0
Samples: 4

Max nTPM: 49.1
Min nTPM: 41.4
Sample A Female 49.1
Sample B Female 43.6
Sample C Male 45.8
Sample D Male 41.4
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 59.5
Min nTPM: 42.2
Sample A Female 59.5
Sample B Female 42.2
Sample C Male 52.9
Sample D Male 49.2
Periaqueductal gray
nTPM: 45.2
Samples: 3

Max nTPM: 52.6
Min nTPM: 41.2
Sample B Female 41.7
Sample C Male 52.6
Sample D Male 41.2
Superior colliculi
nTPM: 53.1
Samples: 4

Max nTPM: 56.4
Min nTPM: 50.0
Sample A Female 54.3
Sample B Female 56.4
Sample C Male 50.0
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 82.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.8
Samples: 4

Max nTPM: 85.3
Min nTPM: 80.6
Sample A Male 80.6
Sample B Male 81.0
Sample C Female 84.1
Sample D Female 85.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
73716596 Antisense, RP_051206_03_D10, Mouse strain C57BL/6J (56 days, male) 4.8

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